Zinc in PDB 7yix: The Cryo-Em Structure of Human Tissue Nonspecific Alkaline Phosphatase and Single-Chain Fragment Variable (Scfv) Complex.

Enzymatic activity of The Cryo-Em Structure of Human Tissue Nonspecific Alkaline Phosphatase and Single-Chain Fragment Variable (Scfv) Complex.

Other elements in 7yix:

Zinc Binding Sites:

Zinc binding site 1 out of 4 in 7yix

Zinc Binding Sites List in 7yix

Zinc binding site 1 out of 4 in the The Cryo-Em Structure of Human Tissue Nonspecific Alkaline Phosphatase and Single-Chain Fragment Variable (Scfv) Complex.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Cryo-Em Structure of Human Tissue Nonspecific Alkaline Phosphatase and Single-Chain Fragment Variable (Scfv) Complex. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn604 b:62.9 occ:1.00 NE2 A:HIS454 2.3 53.3 1.0 NE2 A:HIS341 2.3 49.9 1.0 OD1 A:ASP337 2.4 53.1 1.0 OD2 A:ASP337 2.4 53.1 1.0 CG A:ASP337 2.6 53.1 1.0 CD2 A:HIS341 3.1 49.9 1.0 CE1 A:HIS454 3.1 53.3 1.0 CE1 A:HIS341 3.4 49.9 1.0 CD2 A:HIS454 3.4 53.3 1.0 NE2 A:HIS379 3.9 53.9 1.0 CE1 A:HIS379 4.0 53.9 1.0 CB A:ASP337 4.0 53.1 1.0 OG A:SER110 4.2 55.9 1.0 ND1 A:HIS454 4.3 53.3 1.0 CG A:HIS341 4.3 49.9 1.0 ND1 A:HIS341 4.4 49.9 1.0 CE1 A:HIS381 4.4 49.9 1.0 ZN A:ZN606 4.4 74.6 1.0 CG A:HIS454 4.4 53.3 1.0 NE2 A:HIS381 4.6 49.9 1.0 CA A:ASP337 4.9 53.1 1.0 O A:ASP337 5.0 53.1 1.0

Zinc binding site 2 out of 4 in 7yix

Zinc Binding Sites List in 7yix

Zinc binding site 2 out of 4 in the The Cryo-Em Structure of Human Tissue Nonspecific Alkaline Phosphatase and Single-Chain Fragment Variable (Scfv) Complex.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Cryo-Em Structure of Human Tissue Nonspecific Alkaline Phosphatase and Single-Chain Fragment Variable (Scfv) Complex. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn606 b:74.6 occ:1.00 OD2 A:ASP378 2.1 54.9 1.0 NE2 A:HIS379 2.3 53.9 1.0 CG A:ASP378 2.7 54.9 1.0 OD1 A:ASP378 2.7 54.9 1.0 CE1 A:HIS379 2.7 53.9 1.0 OD2 A:ASP337 3.0 53.1 1.0 CD2 A:HIS379 3.0 53.9 1.0 OG A:SER110 3.1 55.9 1.0 ND1 A:HIS379 3.5 53.9 1.0 CG A:HIS379 3.7 53.9 1.0 CB A:ASP378 4.1 54.9 1.0 CG A:ASP337 4.1 53.1 1.0 CB A:SER110 4.2 55.9 1.0 N A:GLY61 4.2 52.0 1.0 CG A:ASP60 4.2 56.0 1.0 OD2 A:ASP60 4.3 56.0 1.0 CB A:ASP60 4.3 56.0 1.0 CA A:SER110 4.3 55.9 1.0 ZN A:ZN604 4.4 62.9 1.0 CA A:ASP60 4.5 56.0 1.0 C A:ASP60 4.7 56.0 1.0 N A:HIS379 4.7 53.9 1.0 OD1 A:ASP60 4.7 56.0 1.0 CE1 A:HIS454 4.8 53.3 1.0 O A:ASP109 4.8 58.7 1.0 N A:SER110 4.9 55.9 1.0 OD1 A:ASP337 4.9 53.1 1.0 NE2 A:HIS454 4.9 53.3 1.0 CB A:ASP337 4.9 53.1 1.0 CA A:GLY61 4.9 52.0 1.0 C A:ASP378 5.0 54.9 1.0 CB A:HIS379 5.0 53.9 1.0

Zinc binding site 3 out of 4 in 7yix

Zinc Binding Sites List in 7yix

Zinc binding site 3 out of 4 in the The Cryo-Em Structure of Human Tissue Nonspecific Alkaline Phosphatase and Single-Chain Fragment Variable (Scfv) Complex.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Cryo-Em Structure of Human Tissue Nonspecific Alkaline Phosphatase and Single-Chain Fragment Variable (Scfv) Complex. within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn604 b:67.5 occ:1.00 OD2 B:ASP337 2.0 52.4 1.0 NE2 B:HIS341 2.3 50.8 1.0 NE2 B:HIS454 2.3 54.0 1.0 CG B:ASP337 2.8 52.4 1.0 CE1 B:HIS454 2.8 54.0 1.0 OD1 B:ASP337 2.9 52.4 1.0 CD2 B:HIS341 3.2 50.8 1.0 CE1 B:HIS341 3.3 50.8 1.0 CD2 B:HIS454 3.5 54.0 1.0 NE2 B:HIS379 3.8 55.9 1.0 ND1 B:HIS454 4.0 54.0 1.0 OG B:SER110 4.2 56.7 1.0 CE1 B:HIS379 4.2 55.9 1.0 CB B:ASP337 4.2 52.4 1.0 CG B:HIS454 4.4 54.0 1.0 CG B:HIS341 4.4 50.8 1.0 ND1 B:HIS341 4.4 50.8 1.0 CE1 B:HIS381 4.5 50.8 1.0 ZN B:ZN606 4.6 76.6 1.0 NE2 B:HIS381 4.6 50.8 1.0 CD2 B:HIS379 4.9 55.9 1.0

Zinc binding site 4 out of 4 in 7yix

Zinc Binding Sites List in 7yix

Zinc binding site 4 out of 4 in the The Cryo-Em Structure of Human Tissue Nonspecific Alkaline Phosphatase and Single-Chain Fragment Variable (Scfv) Complex.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Cryo-Em Structure of Human Tissue Nonspecific Alkaline Phosphatase and Single-Chain Fragment Variable (Scfv) Complex. within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn606 b:76.6 occ:1.00 CE1 B:HIS379 1.4 55.9 1.0 OD1 B:ASP60 2.1 55.8 1.0 OD2 B:ASP378 2.2 55.5 1.0 ND1 B:HIS379 2.3 55.9 1.0 NE2 B:HIS379 2.5 55.9 1.0 CG B:ASP378 3.0 55.5 1.0 OD1 B:ASP378 3.1 55.5 1.0 OG B:SER110 3.3 56.7 1.0 CG B:ASP60 3.3 55.8 1.0 CG B:HIS379 3.5 55.9 1.0 CD2 B:HIS379 3.5 55.9 1.0 OD2 B:ASP60 3.9 55.8 1.0 CB B:SER110 4.1 56.7 1.0 N B:GLY61 4.1 52.7 1.0 CA B:SER110 4.3 56.7 1.0 CE1 B:HIS454 4.3 54.0 1.0 OD2 B:ASP337 4.3 52.4 1.0 CB B:ASP378 4.3 55.5 1.0 CG B:ASP337 4.3 52.4 1.0 OD1 B:ASP337 4.4 52.4 1.0 CB B:ASP60 4.4 55.8 1.0 CA B:ASP60 4.5 55.8 1.0 ZN B:ZN604 4.6 67.5 1.0 C B:ASP60 4.6 55.8 1.0 CB B:HIS379 4.8 55.9 1.0 N B:SER110 4.8 56.7 1.0 CA B:GLY61 4.8 52.7 1.0 O B:ASP109 4.9 58.9 1.0 N B:HIS379 4.9 55.9 1.0 CB B:ASP337 4.9 52.4 1.0 ND1 B:HIS454 4.9 54.0 1.0

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