Zinc in PDB 7yh9: Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid
Enzymatic activity of Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid
All present enzymatic activity of Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid:
3.5.2.6;
Protein crystallography data
The structure of Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid, PDB code: 7yh9
was solved by
G.-B.Li,
Y.-H.Yan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.97 /
2.39
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
111.454,
173.143,
97.447,
90,
123.88,
90
|
R / Rfree (%)
|
18.7 /
23.5
|
Zinc Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Zinc atom in the Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid
(pdb code 7yh9). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 12 binding sites of Zinc where determined in the
Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid, PDB code: 7yh9:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 12 in 7yh9
Go back to
Zinc Binding Sites List in 7yh9
Zinc binding site 1 out
of 12 in the Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn301
b:29.8
occ:1.00
|
NE2
|
A:HIS157
|
2.0
|
26.2
|
1.0
|
ND1
|
A:HIS97
|
2.0
|
21.6
|
1.0
|
NE2
|
A:HIS95
|
2.0
|
27.0
|
1.0
|
O24
|
A:IT0303
|
2.2
|
26.8
|
1.0
|
O23
|
A:IT0303
|
2.4
|
30.1
|
1.0
|
C22
|
A:IT0303
|
2.6
|
28.7
|
1.0
|
CD2
|
A:HIS95
|
2.9
|
23.9
|
1.0
|
CD2
|
A:HIS157
|
2.9
|
25.7
|
1.0
|
CE1
|
A:HIS157
|
3.0
|
30.8
|
1.0
|
CE1
|
A:HIS97
|
3.0
|
23.3
|
1.0
|
CG
|
A:HIS97
|
3.0
|
25.6
|
1.0
|
CE1
|
A:HIS95
|
3.1
|
25.0
|
1.0
|
CB
|
A:HIS97
|
3.4
|
23.6
|
1.0
|
ZN
|
A:ZN302
|
3.5
|
31.4
|
1.0
|
OD1
|
A:ASP99
|
3.8
|
26.0
|
1.0
|
SG
|
A:CYS176
|
3.9
|
27.5
|
1.0
|
O03
|
A:IT0303
|
4.0
|
36.7
|
1.0
|
CB
|
A:CYS176
|
4.0
|
21.9
|
1.0
|
ND1
|
A:HIS157
|
4.1
|
27.2
|
1.0
|
CG
|
A:HIS157
|
4.1
|
25.9
|
1.0
|
CG
|
A:HIS95
|
4.1
|
24.6
|
1.0
|
C21
|
A:IT0303
|
4.1
|
29.1
|
1.0
|
NE2
|
A:HIS97
|
4.1
|
20.7
|
1.0
|
CD2
|
A:HIS97
|
4.2
|
18.1
|
1.0
|
ND1
|
A:HIS95
|
4.2
|
28.5
|
1.0
|
OD2
|
A:ASP99
|
4.4
|
23.2
|
1.0
|
CG2
|
A:THR158
|
4.4
|
22.4
|
1.0
|
C02
|
A:IT0303
|
4.4
|
31.1
|
1.0
|
CG
|
A:ASP99
|
4.5
|
21.2
|
1.0
|
CA
|
A:HIS97
|
4.8
|
20.9
|
1.0
|
C04
|
A:IT0303
|
4.8
|
26.8
|
1.0
|
|
Zinc binding site 2 out
of 12 in 7yh9
Go back to
Zinc Binding Sites List in 7yh9
Zinc binding site 2 out
of 12 in the Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn302
b:31.4
occ:1.00
|
O24
|
A:IT0303
|
1.7
|
26.8
|
1.0
|
NE2
|
A:HIS215
|
2.0
|
26.3
|
1.0
|
OD2
|
A:ASP99
|
2.0
|
23.2
|
1.0
|
SG
|
A:CYS176
|
2.2
|
27.5
|
1.0
|
O03
|
A:IT0303
|
2.4
|
36.7
|
1.0
|
C22
|
A:IT0303
|
2.8
|
28.7
|
1.0
|
CD2
|
A:HIS215
|
2.9
|
28.0
|
1.0
|
CE1
|
A:HIS215
|
3.0
|
27.5
|
1.0
|
CG
|
A:ASP99
|
3.1
|
21.2
|
1.0
|
C21
|
A:IT0303
|
3.2
|
29.1
|
1.0
|
C02
|
A:IT0303
|
3.3
|
31.1
|
1.0
|
C04
|
A:IT0303
|
3.4
|
26.8
|
1.0
|
CB
|
A:CYS176
|
3.4
|
21.9
|
1.0
|
OD1
|
A:ASP99
|
3.5
|
26.0
|
1.0
|
ZN
|
A:ZN301
|
3.5
|
29.8
|
1.0
|
O23
|
A:IT0303
|
3.9
|
30.1
|
1.0
|
ND1
|
A:HIS215
|
4.0
|
26.0
|
1.0
|
CG
|
A:HIS215
|
4.1
|
26.5
|
1.0
|
C20
|
A:IT0303
|
4.1
|
29.3
|
1.0
|
CE1
|
A:HIS95
|
4.2
|
25.0
|
1.0
|
NE2
|
A:HIS95
|
4.2
|
27.0
|
1.0
|
CB
|
A:SER214
|
4.2
|
19.2
|
1.0
|
NE2
|
A:HIS157
|
4.4
|
26.2
|
1.0
|
CB
|
A:ASP99
|
4.4
|
19.9
|
1.0
|
C05
|
A:IT0303
|
4.4
|
33.1
|
1.0
|
OG
|
A:SER214
|
4.4
|
21.6
|
1.0
|
O01
|
A:IT0303
|
4.5
|
34.2
|
1.0
|
CA
|
A:CYS176
|
4.5
|
20.5
|
1.0
|
CE
|
A:LYS51
|
4.7
|
17.6
|
1.0
|
CE1
|
A:HIS157
|
4.7
|
30.8
|
1.0
|
CD
|
A:LYS51
|
4.7
|
18.9
|
1.0
|
C19
|
A:IT0303
|
5.0
|
32.0
|
1.0
|
|
Zinc binding site 3 out
of 12 in 7yh9
Go back to
Zinc Binding Sites List in 7yh9
Zinc binding site 3 out
of 12 in the Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn301
b:30.7
occ:1.00
|
OD2
|
B:ASP99
|
1.9
|
21.9
|
1.0
|
O24
|
B:IT0303
|
1.9
|
23.1
|
1.0
|
NE2
|
B:HIS215
|
2.0
|
25.3
|
1.0
|
SG
|
B:CYS176
|
2.2
|
29.3
|
1.0
|
O01
|
B:IT0303
|
2.9
|
29.0
|
1.0
|
C22
|
B:IT0303
|
2.9
|
26.6
|
1.0
|
CE1
|
B:HIS215
|
3.0
|
25.1
|
1.0
|
CG
|
B:ASP99
|
3.0
|
24.5
|
1.0
|
CD2
|
B:HIS215
|
3.1
|
24.9
|
1.0
|
C21
|
B:IT0303
|
3.4
|
28.4
|
1.0
|
CB
|
B:CYS176
|
3.4
|
21.8
|
1.0
|
ZN
|
B:ZN302
|
3.5
|
27.9
|
1.0
|
OD1
|
B:ASP99
|
3.6
|
28.6
|
1.0
|
C02
|
B:IT0303
|
3.7
|
26.3
|
1.0
|
C04
|
B:IT0303
|
3.7
|
28.2
|
1.0
|
O23
|
B:IT0303
|
4.0
|
26.7
|
1.0
|
C20
|
B:IT0303
|
4.1
|
29.6
|
1.0
|
ND1
|
B:HIS215
|
4.1
|
25.8
|
1.0
|
CE1
|
B:HIS95
|
4.2
|
25.4
|
1.0
|
CG
|
B:HIS215
|
4.2
|
25.0
|
1.0
|
NE2
|
B:HIS95
|
4.2
|
24.7
|
1.0
|
CB
|
B:ASP99
|
4.3
|
21.4
|
1.0
|
CB
|
B:SER214
|
4.3
|
22.3
|
1.0
|
NE2
|
B:HIS157
|
4.4
|
18.8
|
1.0
|
CA
|
B:CYS176
|
4.5
|
18.5
|
1.0
|
OG
|
B:SER214
|
4.5
|
24.0
|
1.0
|
CE
|
B:LYS51
|
4.5
|
21.1
|
1.0
|
CE1
|
B:HIS157
|
4.7
|
22.4
|
1.0
|
C05
|
B:IT0303
|
4.8
|
31.9
|
1.0
|
CD
|
B:LYS51
|
4.8
|
20.5
|
1.0
|
O03
|
B:IT0303
|
4.9
|
34.5
|
1.0
|
|
Zinc binding site 4 out
of 12 in 7yh9
Go back to
Zinc Binding Sites List in 7yh9
Zinc binding site 4 out
of 12 in the Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn302
b:27.9
occ:1.00
|
ND1
|
B:HIS97
|
1.9
|
19.8
|
1.0
|
NE2
|
B:HIS157
|
2.0
|
18.8
|
1.0
|
O24
|
B:IT0303
|
2.1
|
23.1
|
1.0
|
NE2
|
B:HIS95
|
2.1
|
24.7
|
1.0
|
O23
|
B:IT0303
|
2.6
|
26.7
|
1.0
|
C22
|
B:IT0303
|
2.7
|
26.6
|
1.0
|
CE1
|
B:HIS97
|
2.8
|
24.8
|
1.0
|
CE1
|
B:HIS157
|
2.9
|
22.4
|
1.0
|
CG
|
B:HIS97
|
3.0
|
20.9
|
1.0
|
CD2
|
B:HIS95
|
3.0
|
23.7
|
1.0
|
CD2
|
B:HIS157
|
3.1
|
21.1
|
1.0
|
CE1
|
B:HIS95
|
3.2
|
25.4
|
1.0
|
CB
|
B:HIS97
|
3.4
|
24.7
|
1.0
|
ZN
|
B:ZN301
|
3.5
|
30.7
|
1.0
|
SG
|
B:CYS176
|
3.8
|
29.3
|
1.0
|
OD1
|
B:ASP99
|
3.8
|
28.6
|
1.0
|
O01
|
B:IT0303
|
3.9
|
29.0
|
1.0
|
NE2
|
B:HIS97
|
4.0
|
22.5
|
1.0
|
ND1
|
B:HIS157
|
4.0
|
18.8
|
1.0
|
CD2
|
B:HIS97
|
4.0
|
21.3
|
1.0
|
CB
|
B:CYS176
|
4.1
|
21.8
|
1.0
|
OD2
|
B:ASP99
|
4.1
|
21.9
|
1.0
|
CG
|
B:HIS157
|
4.2
|
20.9
|
1.0
|
C21
|
B:IT0303
|
4.2
|
28.4
|
1.0
|
CG
|
B:HIS95
|
4.2
|
22.9
|
1.0
|
ND1
|
B:HIS95
|
4.2
|
24.1
|
1.0
|
CG
|
B:ASP99
|
4.4
|
24.5
|
1.0
|
CG2
|
B:THR158
|
4.5
|
19.8
|
1.0
|
C02
|
B:IT0303
|
4.7
|
26.3
|
1.0
|
CA
|
B:HIS97
|
4.8
|
22.9
|
1.0
|
|
Zinc binding site 5 out
of 12 in 7yh9
Go back to
Zinc Binding Sites List in 7yh9
Zinc binding site 5 out
of 12 in the Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn301
b:32.8
occ:1.00
|
NE2
|
C:HIS157
|
2.0
|
27.9
|
1.0
|
O24
|
C:IT0303
|
2.0
|
36.3
|
1.0
|
ND1
|
C:HIS97
|
2.0
|
26.6
|
1.0
|
NE2
|
C:HIS95
|
2.1
|
30.0
|
1.0
|
O23
|
C:IT0303
|
2.4
|
37.5
|
1.0
|
C22
|
C:IT0303
|
2.5
|
37.2
|
1.0
|
CE1
|
C:HIS157
|
2.8
|
30.1
|
1.0
|
CD2
|
C:HIS95
|
3.0
|
31.6
|
1.0
|
CE1
|
C:HIS97
|
3.0
|
29.9
|
1.0
|
CG
|
C:HIS97
|
3.0
|
25.8
|
1.0
|
CD2
|
C:HIS157
|
3.1
|
29.1
|
1.0
|
CE1
|
C:HIS95
|
3.2
|
27.2
|
1.0
|
CB
|
C:HIS97
|
3.4
|
28.1
|
1.0
|
ZN
|
C:ZN302
|
3.5
|
45.8
|
1.0
|
OD1
|
C:ASP99
|
3.8
|
30.9
|
1.0
|
SG
|
C:CYS176
|
3.8
|
35.6
|
1.0
|
O03
|
C:IT0303
|
4.0
|
40.0
|
1.0
|
C21
|
C:IT0303
|
4.0
|
35.1
|
1.0
|
CB
|
C:CYS176
|
4.0
|
30.8
|
1.0
|
ND1
|
C:HIS157
|
4.0
|
22.9
|
1.0
|
NE2
|
C:HIS97
|
4.1
|
24.7
|
1.0
|
CD2
|
C:HIS97
|
4.2
|
25.2
|
1.0
|
CG
|
C:HIS95
|
4.2
|
27.4
|
1.0
|
CG
|
C:HIS157
|
4.2
|
25.5
|
1.0
|
ND1
|
C:HIS95
|
4.2
|
27.4
|
1.0
|
OD2
|
C:ASP99
|
4.3
|
28.0
|
1.0
|
CG
|
C:ASP99
|
4.4
|
26.3
|
1.0
|
C02
|
C:IT0303
|
4.6
|
35.8
|
1.0
|
CG2
|
C:THR158
|
4.7
|
29.4
|
1.0
|
CA
|
C:HIS97
|
4.8
|
22.9
|
1.0
|
C04
|
C:IT0303
|
4.8
|
34.4
|
1.0
|
C20
|
C:IT0303
|
4.9
|
40.6
|
1.0
|
|
Zinc binding site 6 out
of 12 in 7yh9
Go back to
Zinc Binding Sites List in 7yh9
Zinc binding site 6 out
of 12 in the Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn302
b:45.8
occ:1.00
|
O24
|
C:IT0303
|
1.9
|
36.3
|
1.0
|
OD2
|
C:ASP99
|
2.0
|
28.0
|
1.0
|
NE2
|
C:HIS215
|
2.0
|
34.6
|
1.0
|
SG
|
C:CYS176
|
2.1
|
35.6
|
1.0
|
O03
|
C:IT0303
|
2.8
|
40.0
|
1.0
|
C22
|
C:IT0303
|
2.8
|
37.2
|
1.0
|
CD2
|
C:HIS215
|
3.0
|
35.0
|
1.0
|
CE1
|
C:HIS215
|
3.0
|
28.9
|
1.0
|
CG
|
C:ASP99
|
3.1
|
26.3
|
1.0
|
C21
|
C:IT0303
|
3.2
|
35.1
|
1.0
|
CB
|
C:CYS176
|
3.3
|
30.8
|
1.0
|
C04
|
C:IT0303
|
3.5
|
34.4
|
1.0
|
ZN
|
C:ZN301
|
3.5
|
32.8
|
1.0
|
OD1
|
C:ASP99
|
3.5
|
30.9
|
1.0
|
C02
|
C:IT0303
|
3.6
|
35.8
|
1.0
|
C20
|
C:IT0303
|
3.9
|
40.6
|
1.0
|
O23
|
C:IT0303
|
4.0
|
37.5
|
1.0
|
ND1
|
C:HIS215
|
4.1
|
33.5
|
1.0
|
CG
|
C:HIS215
|
4.1
|
34.1
|
1.0
|
NE2
|
C:HIS95
|
4.2
|
30.0
|
1.0
|
NE2
|
C:HIS157
|
4.2
|
27.9
|
1.0
|
CE1
|
C:HIS95
|
4.3
|
27.2
|
1.0
|
CB
|
C:ASP99
|
4.3
|
28.5
|
1.0
|
CB
|
C:SER214
|
4.4
|
30.6
|
1.0
|
C05
|
C:IT0303
|
4.4
|
42.0
|
1.0
|
CA
|
C:CYS176
|
4.5
|
29.8
|
1.0
|
CE1
|
C:HIS157
|
4.6
|
30.1
|
1.0
|
OG
|
C:SER214
|
4.7
|
30.6
|
1.0
|
CD
|
C:LYS51
|
4.7
|
25.3
|
1.0
|
O01
|
C:IT0303
|
4.8
|
35.9
|
1.0
|
C19
|
C:IT0303
|
4.8
|
44.5
|
1.0
|
CE
|
C:LYS51
|
4.8
|
23.1
|
1.0
|
C18
|
C:IT0303
|
5.0
|
47.0
|
1.0
|
|
Zinc binding site 7 out
of 12 in 7yh9
Go back to
Zinc Binding Sites List in 7yh9
Zinc binding site 7 out
of 12 in the Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn301
b:22.6
occ:1.00
|
O03
|
D:IT0303
|
1.9
|
24.5
|
1.0
|
ND1
|
D:HIS97
|
1.9
|
15.9
|
1.0
|
NE2
|
D:HIS157
|
2.0
|
15.5
|
1.0
|
NE2
|
D:HIS95
|
2.1
|
20.7
|
1.0
|
C02
|
D:IT0303
|
2.7
|
19.8
|
1.0
|
O01
|
D:IT0303
|
2.7
|
23.0
|
1.0
|
CE1
|
D:HIS97
|
2.9
|
17.6
|
1.0
|
CD2
|
D:HIS95
|
2.9
|
17.7
|
1.0
|
CE1
|
D:HIS157
|
2.9
|
20.0
|
1.0
|
CG
|
D:HIS97
|
3.0
|
16.6
|
1.0
|
CD2
|
D:HIS157
|
3.1
|
17.9
|
1.0
|
CE1
|
D:HIS95
|
3.2
|
21.3
|
1.0
|
CB
|
D:HIS97
|
3.4
|
18.0
|
1.0
|
ZN
|
D:ZN302
|
3.6
|
22.9
|
1.0
|
SG
|
D:CYS176
|
4.0
|
26.2
|
1.0
|
NE2
|
D:HIS97
|
4.0
|
16.4
|
1.0
|
CB
|
D:CYS176
|
4.0
|
19.7
|
1.0
|
ND1
|
D:HIS157
|
4.1
|
16.6
|
1.0
|
CD2
|
D:HIS97
|
4.1
|
15.4
|
1.0
|
OD1
|
D:ASP99
|
4.1
|
19.8
|
1.0
|
CG
|
D:HIS95
|
4.1
|
20.5
|
1.0
|
C04
|
D:IT0303
|
4.1
|
18.0
|
1.0
|
O23
|
D:IT0303
|
4.1
|
23.3
|
1.0
|
CG
|
D:HIS157
|
4.2
|
18.0
|
1.0
|
ND1
|
D:HIS95
|
4.2
|
21.1
|
1.0
|
CG2
|
D:THR158
|
4.4
|
18.8
|
1.0
|
OD2
|
D:ASP99
|
4.4
|
14.1
|
1.0
|
C17
|
D:IT0303
|
4.4
|
16.2
|
1.0
|
CG
|
D:ASP99
|
4.7
|
17.3
|
1.0
|
N06
|
D:IT0303
|
4.7
|
21.2
|
1.0
|
CA
|
D:HIS97
|
4.8
|
20.8
|
1.0
|
C22
|
D:IT0303
|
4.9
|
19.8
|
1.0
|
C05
|
D:IT0303
|
4.9
|
17.9
|
1.0
|
C21
|
D:IT0303
|
5.0
|
18.3
|
1.0
|
|
Zinc binding site 8 out
of 12 in 7yh9
Go back to
Zinc Binding Sites List in 7yh9
Zinc binding site 8 out
of 12 in the Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn302
b:22.9
occ:1.00
|
OD2
|
D:ASP99
|
1.8
|
14.1
|
1.0
|
NE2
|
D:HIS215
|
2.0
|
17.8
|
1.0
|
O03
|
D:IT0303
|
2.2
|
24.5
|
1.0
|
SG
|
D:CYS176
|
2.3
|
26.2
|
1.0
|
CE1
|
D:HIS215
|
2.9
|
16.8
|
1.0
|
CG
|
D:ASP99
|
2.9
|
17.3
|
1.0
|
C02
|
D:IT0303
|
3.0
|
19.8
|
1.0
|
CD2
|
D:HIS215
|
3.1
|
20.9
|
1.0
|
C04
|
D:IT0303
|
3.2
|
18.0
|
1.0
|
CB
|
D:CYS176
|
3.4
|
19.7
|
1.0
|
OD1
|
D:ASP99
|
3.4
|
19.8
|
1.0
|
O23
|
D:IT0303
|
3.4
|
23.3
|
1.0
|
ZN
|
D:ZN301
|
3.6
|
22.6
|
1.0
|
C21
|
D:IT0303
|
3.6
|
18.3
|
1.0
|
C05
|
D:IT0303
|
3.6
|
17.9
|
1.0
|
C22
|
D:IT0303
|
4.0
|
19.8
|
1.0
|
CE1
|
D:HIS95
|
4.0
|
21.3
|
1.0
|
NE2
|
D:HIS95
|
4.0
|
20.7
|
1.0
|
ND1
|
D:HIS215
|
4.1
|
19.0
|
1.0
|
N06
|
D:IT0303
|
4.1
|
21.2
|
1.0
|
O01
|
D:IT0303
|
4.2
|
23.0
|
1.0
|
CG
|
D:HIS215
|
4.2
|
16.4
|
1.0
|
CB
|
D:ASP99
|
4.2
|
13.7
|
1.0
|
CB
|
D:SER214
|
4.2
|
17.1
|
1.0
|
OG
|
D:SER214
|
4.4
|
19.0
|
1.0
|
NE2
|
D:HIS157
|
4.4
|
15.5
|
1.0
|
CE
|
D:LYS51
|
4.4
|
15.3
|
1.0
|
C20
|
D:IT0303
|
4.5
|
18.0
|
1.0
|
C18
|
D:IT0303
|
4.5
|
17.7
|
1.0
|
CD
|
D:LYS51
|
4.5
|
14.4
|
1.0
|
N07
|
D:IT0303
|
4.6
|
18.1
|
1.0
|
CA
|
D:CYS176
|
4.6
|
17.0
|
1.0
|
C17
|
D:IT0303
|
4.8
|
16.2
|
1.0
|
C19
|
D:IT0303
|
4.9
|
15.6
|
1.0
|
CE1
|
D:HIS157
|
5.0
|
20.0
|
1.0
|
|
Zinc binding site 9 out
of 12 in 7yh9
Go back to
Zinc Binding Sites List in 7yh9
Zinc binding site 9 out
of 12 in the Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn301
b:29.4
occ:1.00
|
OD2
|
E:ASP99
|
1.9
|
24.9
|
1.0
|
NE2
|
E:HIS215
|
2.0
|
23.7
|
1.0
|
SG
|
E:CYS176
|
2.2
|
31.6
|
1.0
|
O01
|
E:IT0303
|
2.2
|
26.9
|
1.0
|
CE1
|
E:HIS215
|
2.9
|
21.7
|
1.0
|
CG
|
E:ASP99
|
2.9
|
25.6
|
1.0
|
C02
|
E:IT0303
|
3.0
|
24.1
|
1.0
|
CD2
|
E:HIS215
|
3.1
|
23.1
|
1.0
|
C04
|
E:IT0303
|
3.2
|
21.1
|
1.0
|
O24
|
E:IT0303
|
3.4
|
25.9
|
1.0
|
OD1
|
E:ASP99
|
3.4
|
27.5
|
1.0
|
CB
|
E:CYS176
|
3.4
|
21.2
|
1.0
|
ZN
|
E:ZN302
|
3.4
|
27.2
|
1.0
|
C21
|
E:IT0303
|
3.6
|
23.4
|
1.0
|
C05
|
E:IT0303
|
3.7
|
25.4
|
1.0
|
C22
|
E:IT0303
|
3.9
|
22.7
|
1.0
|
ND1
|
E:HIS215
|
4.1
|
21.8
|
1.0
|
CE1
|
E:HIS95
|
4.1
|
25.0
|
1.0
|
N06
|
E:IT0303
|
4.1
|
26.5
|
1.0
|
NE2
|
E:HIS95
|
4.2
|
22.1
|
1.0
|
CG
|
E:HIS215
|
4.2
|
19.1
|
1.0
|
CB
|
E:ASP99
|
4.2
|
20.0
|
1.0
|
O03
|
E:IT0303
|
4.2
|
26.6
|
1.0
|
CB
|
E:SER214
|
4.3
|
19.5
|
1.0
|
N07
|
E:IT0303
|
4.4
|
23.1
|
1.0
|
CE
|
E:LYS51
|
4.4
|
20.3
|
1.0
|
NE2
|
E:HIS157
|
4.4
|
19.9
|
1.0
|
CD
|
E:LYS51
|
4.5
|
17.6
|
1.0
|
C20
|
E:IT0303
|
4.5
|
25.4
|
1.0
|
C18
|
E:IT0303
|
4.6
|
27.5
|
1.0
|
CA
|
E:CYS176
|
4.6
|
20.1
|
1.0
|
OG
|
E:SER214
|
4.6
|
24.1
|
1.0
|
C17
|
E:IT0303
|
4.9
|
24.5
|
1.0
|
C19
|
E:IT0303
|
4.9
|
22.2
|
1.0
|
CE1
|
E:HIS157
|
5.0
|
23.7
|
1.0
|
|
Zinc binding site 10 out
of 12 in 7yh9
Go back to
Zinc Binding Sites List in 7yh9
Zinc binding site 10 out
of 12 in the Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Crystal Structure of Imp-1 Mbl in Complex with 3-(4-Benzyl-1H-1,2,3- Triazol-1-Yl)Phthalic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn302
b:27.2
occ:1.00
|
O01
|
E:IT0303
|
1.8
|
26.9
|
1.0
|
NE2
|
E:HIS95
|
2.0
|
22.1
|
1.0
|
NE2
|
E:HIS157
|
2.0
|
19.9
|
1.0
|
ND1
|
E:HIS97
|
2.0
|
22.0
|
1.0
|
C02
|
E:IT0303
|
2.8
|
24.1
|
1.0
|
CD2
|
E:HIS95
|
2.9
|
23.5
|
1.0
|
CE1
|
E:HIS97
|
2.9
|
26.3
|
1.0
|
O03
|
E:IT0303
|
3.0
|
26.6
|
1.0
|
CD2
|
E:HIS157
|
3.0
|
21.8
|
1.0
|
CE1
|
E:HIS157
|
3.0
|
23.7
|
1.0
|
CE1
|
E:HIS95
|
3.1
|
25.0
|
1.0
|
CG
|
E:HIS97
|
3.1
|
23.0
|
1.0
|
ZN
|
E:ZN301
|
3.4
|
29.4
|
1.0
|
CB
|
E:HIS97
|
3.5
|
25.5
|
1.0
|
SG
|
E:CYS176
|
3.8
|
31.6
|
1.0
|
CB
|
E:CYS176
|
3.9
|
21.2
|
1.0
|
OD1
|
E:ASP99
|
4.0
|
27.5
|
1.0
|
NE2
|
E:HIS97
|
4.0
|
17.7
|
1.0
|
CG
|
E:HIS95
|
4.1
|
22.7
|
1.0
|
ND1
|
E:HIS157
|
4.1
|
21.1
|
1.0
|
ND1
|
E:HIS95
|
4.1
|
26.8
|
1.0
|
CD2
|
E:HIS97
|
4.1
|
17.0
|
1.0
|
CG
|
E:HIS157
|
4.1
|
21.5
|
1.0
|
O24
|
E:IT0303
|
4.2
|
25.9
|
1.0
|
C04
|
E:IT0303
|
4.2
|
21.1
|
1.0
|
OD2
|
E:ASP99
|
4.4
|
24.9
|
1.0
|
CG2
|
E:THR158
|
4.4
|
24.8
|
1.0
|
CG
|
E:ASP99
|
4.6
|
25.6
|
1.0
|
C17
|
E:IT0303
|
4.6
|
24.5
|
1.0
|
N06
|
E:IT0303
|
4.8
|
26.5
|
1.0
|
CA
|
E:HIS97
|
4.9
|
21.1
|
1.0
|
C22
|
E:IT0303
|
4.9
|
22.7
|
1.0
|
|
Reference:
Y.H.Yan,
H.S.Ding,
K.R.Zhu,
B.S.Mu,
Y.Zheng,
M.Y.Huang,
C.Zhou,
W.F.Li,
Z.Wang,
Y.Wu,
G.B.Li.
Metal Binding Pharmacophore Click-Derived Discovery of New Broad-Spectrum Metallo-Beta-Lactamase Inhibitors. Eur.J.Med.Chem. V. 257 15473 2023.
ISSN: ISSN 0223-5234
PubMed: 37209449
DOI: 10.1016/J.EJMECH.2023.115473
Page generated: Wed Oct 30 15:49:40 2024
|