Zinc in PDB 7vd8: 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope

All present enzymatic activity of 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope:
1.16.3.1;

The structure of 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope also contains other interesting chemical elements:

Sodium

(Na)

75 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 170; Page 18, Binding sites: 171 - 180; Page 19, Binding sites: 181 - 190; Page 20, Binding sites: 191 - 200; Page 21, Binding sites: 201 - 210; Page 22, Binding sites: 211 - 220; Page 23, Binding sites: 221 - 230; Page 24, Binding sites: 231 - 240; Page 25, Binding sites: 241 - 250; Page 26, Binding sites: 251 - 254;

Binding sites:

The binding sites of Zinc atom in the 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope (pdb code 7vd8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 254 binding sites of Zinc where determined in the 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope, PDB code: 7vd8:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 254 in the 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:21.5 occ:1.00 CD2 A:HIS65 2.0 5.4 1.0 CG A:HIS65 2.1 4.5 1.0 NE2 A:HIS65 2.1 9.6 1.0 ND1 A:HIS65 2.3 7.6 1.0 CE1 A:HIS65 2.3 8.4 1.0 O A:HOH326 2.7 14.3 1.0 CB A:HIS65 3.2 3.2 1.0 CD2 A:TYR137 3.3 2.3 1.0 CE2 A:TYR137 3.3 3.0 1.0 ZN A:ZN214 3.5 32.5 1.0 O A:HIS136 3.6 6.9 1.0 O A:HOH333 4.0 13.2 1.0 CA A:HIS65 4.1 1.7 1.0 CG A:TYR137 4.1 2.4 1.0 CZ A:TYR137 4.1 1.9 1.0 CD A:GLU140 4.3 13.9 1.0 OE2 A:GLU140 4.4 15.8 1.0 OE1 A:GLU140 4.5 12.5 1.0 CA A:TYR137 4.6 2.4 1.0 CG A:GLU140 4.7 8.6 1.0 C A:HIS136 4.7 2.9 1.0 CD1 A:TYR137 4.8 2.3 1.0 OH A:TYR137 4.8 3.7 1.0 CB A:TYR137 4.8 2.0 1.0 CE1 A:TYR137 4.8 2.0 1.0 CB A:GLU140 4.9 6.1 1.0 N A:HIS65 4.9 1.5 1.0

Zinc binding site 2 out of 254 in the 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:12.3 occ:1.00 OD2 A:ASP44 2.3 6.8 1.0 O S:ASN74 2.8 0.6 1.0 N A:ASP44 2.8 1.5 1.0 NH1 S:ARG79 3.0 5.8 1.0 CG A:ASP44 3.1 3.0 1.0 CB A:ASP44 3.1 3.1 1.0 CA A:ASP44 3.6 1.9 1.0 C S:ASN74 3.7 0.6 1.0 NH2 S:ARG79 3.8 8.6 1.0 C A:ARG43 3.8 1.4 1.0 CZ S:ARG79 3.9 5.8 1.0 CA A:ARG43 3.9 1.4 1.0 CA S:GLY77 4.0 1.6 1.0 CA S:ASN74 4.0 0.7 1.0 CE M:LYS146 4.1 4.0 1.0 OD1 A:ASP44 4.3 3.1 1.0 CB A:ARG43 4.3 1.2 1.0 N S:GLY77 4.3 1.3 1.0 CB S:ASN74 4.4 0.6 1.0 OG S:SER6 4.5 6.4 1.0 OD1 S:ASN74 4.5 0.8 1.0 O S:GLY78 4.6 4.9 1.0 CG2 S:VAL8 4.6 1.5 1.0 C S:GLY77 4.6 2.1 1.0 CD M:LYS146 4.7 1.8 1.0 C A:ASP44 4.7 1.9 1.0 CG S:ASN74 4.7 0.6 1.0 N A:ASP45 4.8 1.6 1.0 CG A:ARG43 4.8 1.8 1.0 O A:ARG43 5.0 1.2 1.0 O S:GLY77 5.0 5.2 1.0 N S:GLN75 5.0 0.6 1.0 O A:ASP42 5.0 2.0 1.0

Zinc binding site 3 out of 254 in the 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn203 b:2.1 occ:1.00 NE2 A:HIS173 2.9 3.0 1.0 NE2 E:HIS173 2.9 2.7 1.0 NE2 I:HIS173 2.9 2.8 1.0 NE2 M:HIS173 2.9 2.8 1.0 CE1 A:HIS173 3.7 2.8 1.0 CE1 I:HIS173 3.7 2.6 1.0 CE1 M:HIS173 3.7 2.5 1.0 CE1 E:HIS173 3.7 2.6 1.0 CD2 E:HIS173 4.0 1.5 1.0 CD2 A:HIS173 4.0 1.6 1.0 CD2 I:HIS173 4.0 1.5 1.0 CD2 M:HIS173 4.0 1.5 1.0 CD2 I:LEU169 4.1 0.6 1.0 CD2 A:LEU169 4.1 0.6 1.0 CD2 M:LEU169 4.1 0.5 1.0 CD2 E:LEU169 4.1 0.6 1.0 ND1 I:HIS173 4.9 2.4 1.0 ND1 A:HIS173 4.9 2.6 1.0 ND1 M:HIS173 4.9 2.4 1.0 ND1 E:HIS173 4.9 2.3 1.0 CD1 I:LEU169 5.0 1.3 1.0 CD1 A:LEU169 5.0 1.5 1.0 CD1 M:LEU169 5.0 1.1 1.0 CD1 E:LEU169 5.0 1.3 1.0

Zinc binding site 4 out of 254 in the 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn204 b:19.6 occ:1.00 NH2 A:ARG22 2.7 4.8 1.0 O A:ASP15 2.8 5.2 1.0 NH1 A:ARG22 3.5 3.1 1.0 C A:ASP15 3.5 6.4 1.0 CZ A:ARG22 3.5 5.0 1.0 CA A:ASP15 3.6 9.8 1.0 CB A:ASP15 3.8 11.3 1.0 N A:ALA19 3.8 2.0 1.0 CD2 A:LEU120 3.9 5.6 1.0 CB A:ALA18 3.9 2.8 1.0 CB A:ALA19 4.1 2.3 1.0 OD2 A:ASP15 4.1 30.7 1.0 CG A:ASP15 4.2 18.8 1.0 CA A:ALA19 4.3 2.3 1.0 C A:ALA18 4.4 1.8 1.0 CA A:ALA18 4.6 3.2 1.0 N A:SER16 4.8 5.5 1.0 NE A:ARG22 4.8 4.8 1.0 N A:ASP15 5.0 8.2 1.0 OD1 A:ASP15 5.0 21.0 1.0

Zinc binding site 5 out of 254 in the 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn205 b:13.4 occ:1.00 OD2 A:ASP91 2.2 37.8 1.0 O S:HOH388 2.4 0.0 1.0 CG A:ASP91 2.9 28.0 1.0 CB A:ASP91 3.0 21.5 1.0 NA A:NA206 3.1 9.6 1.0 N S:LEU82 3.2 2.2 1.0 CA A:ASP91 3.4 17.0 1.0 O S:HOH380 3.4 9.8 1.0 O S:ILE80 3.6 3.1 1.0 CA S:PHE81 3.7 3.0 1.0 C S:PHE81 3.9 3.0 1.0 CB S:LEU82 4.0 1.2 1.0 OD1 A:ASP91 4.0 35.7 1.0 O A:HOH305 4.1 9.9 1.0 CA S:LEU82 4.1 2.6 1.0 CG S:LEU82 4.2 2.3 1.0 N A:ASP91 4.2 16.0 1.0 C S:ILE80 4.3 2.5 1.0 O A:CYS90 4.4 14.4 1.0 N S:PHE81 4.4 1.8 1.0 CD1 S:PHE81 4.5 5.5 1.0 C A:ASP91 4.5 16.4 1.0 O S:LEU82 4.5 4.8 1.0 OG A:SER36 4.5 2.9 1.0 O A:ASP91 4.6 15.4 1.0 C A:CYS90 4.7 14.1 1.0 CD1 S:LEU82 4.7 1.5 1.0 CB S:PHE81 4.8 3.4 1.0 C S:LEU82 4.8 2.4 1.0

Zinc binding site 6 out of 254 in the 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn207 b:14.8 occ:1.00 OE2 A:GLU17 2.4 7.1 1.0 O A:ARG79 2.6 2.8 1.0 CD A:GLU17 3.0 8.1 1.0 CE2 A:PHE81 3.0 4.9 1.0 O A:HOH380 3.1 7.9 1.0 CD2 A:PHE81 3.2 4.3 1.0 CG A:GLU17 3.4 4.9 1.0 C A:ARG79 3.6 2.4 1.0 ND2 A:ASN21 3.7 2.3 1.0 CB A:ARG79 3.7 2.9 1.0 N A:ARG79 3.7 3.2 1.0 OE1 A:GLU17 3.9 12.1 1.0 CA A:ARG79 3.9 3.4 1.0 O A:HOH320 3.9 9.2 1.0 O A:HOH367 4.1 8.1 1.0 CZ A:PHE81 4.3 5.0 1.0 CG A:PHE81 4.5 3.7 1.0 CB A:GLU17 4.5 4.2 1.0 N A:ILE80 4.8 2.4 1.0 O A:HOH386 4.8 6.5 1.0 CG A:ARG79 4.9 2.5 1.0 CG A:ASN21 4.9 1.9 1.0 C A:GLY78 5.0 2.7 1.0

Zinc binding site 7 out of 254 in the 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn208 b:19.5 occ:1.00 O A:HOH339 2.7 4.4 1.0 OE1 A:GLU134 3.0 12.2 1.0 OE1 F:GLU134 3.0 13.6 1.0 OE1 T:GLU134 3.0 13.4 1.0 OD1 T:ASP131 3.2 13.3 1.0 OD1 A:ASP131 3.2 13.7 1.0 OD1 F:ASP131 3.2 13.9 1.0 CD A:GLU134 4.1 11.0 1.0 CD F:GLU134 4.1 11.6 1.0 CD T:GLU134 4.1 11.5 1.0 CG T:ASP131 4.2 10.5 1.0 CG A:ASP131 4.2 10.2 1.0 CG F:ASP131 4.2 10.3 1.0 CB T:ASP131 4.6 3.2 1.0 CB F:ASP131 4.6 3.1 1.0 CB A:ASP131 4.6 3.1 1.0 OE2 F:GLU134 4.7 14.3 1.0 OE2 A:GLU134 4.7 13.5 1.0 OE2 T:GLU134 4.7 14.5 1.0 CB A:GLU134 4.8 4.2 1.0 CB T:GLU134 4.8 4.5 1.0 CB F:GLU134 4.8 4.3 1.0 CA T:ASP131 4.8 3.8 1.0 CA A:ASP131 4.8 3.7 1.0 CA F:ASP131 4.8 3.7 1.0 CG A:GLU134 5.0 6.3 1.0 CG T:GLU134 5.0 6.7 1.0

Zinc binding site 8 out of 254 in the 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn209 b:23.0 occ:1.00 O A:HIS60 2.7 3.4 1.0 NH1 S:ARG63 3.0 16.8 1.0 C A:HIS60 3.4 2.3 1.0 CG A:GLU64 3.4 3.9 0.5 CA A:HIS60 3.5 2.5 1.0 CB A:HIS60 3.7 1.9 1.0 CB A:ARG63 3.9 2.9 1.0 N A:GLU64 3.9 1.9 1.0 CZ S:ARG63 3.9 19.0 1.0 CD A:GLU64 4.1 5.9 0.5 NH2 S:ARG63 4.2 22.3 1.0 CD A:ARG63 4.2 14.7 1.0 CG A:HIS60 4.3 2.8 1.0 CG A:ARG63 4.3 8.5 1.0 CD2 A:HIS60 4.3 4.6 1.0 CB A:GLU64 4.4 3.6 0.5 CB A:GLU64 4.4 3.6 0.5 C A:ARG63 4.5 2.1 1.0 CA A:GLU64 4.5 3.0 1.0 OE2 A:GLU64 4.6 7.7 0.5 OE1 A:GLU64 4.6 6.6 0.5 N A:GLU61 4.6 2.2 1.0 CA A:ARG63 4.7 2.3 1.0 N A:HIS60 4.9 1.0 1.0 N A:ARG63 5.0 1.5 1.0

Zinc binding site 9 out of 254 in the 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn211 b:23.2 occ:1.00 OD1 A:ASP84 2.1 13.8 1.0 CG A:ASP84 2.8 10.6 1.0 OD2 A:ASP84 2.8 24.9 1.0 CG S:LYS87 2.9 5.6 1.0 O A:HOH400 3.1 28.4 1.0 N S:LYS87 3.3 2.6 1.0 CD S:LYS87 3.3 13.1 1.0 CB S:LYS87 3.9 5.6 1.0 CB S:LYS86 4.0 2.2 1.0 CD S:LYS86 4.0 8.7 1.0 CA S:LYS86 4.0 2.7 1.0 C S:LYS86 4.1 1.9 1.0 CA S:LYS87 4.2 3.5 1.0 CB A:ASP84 4.2 5.6 1.0 CE S:LYS87 4.3 10.4 1.0 O A:HOH338 4.4 6.9 1.0 O S:LYS87 4.4 2.9 1.0 CG S:LYS86 4.4 3.9 1.0 CE S:LYS86 4.5 8.4 1.0 C S:LYS87 4.8 2.6 1.0 CA A:ASP84 4.8 2.9 1.0 N A:ASP84 4.9 2.5 1.0

Zinc binding site 10 out of 254 in the 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of 1.96 A Structure of Human Apoferritin Obtained From Talos Arctica Microscope within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn212 b:21.2 occ:1.00 O A:HOH357 2.4 0.0 1.0 NZ A:LYS71 2.5 11.8 1.0 O F:HOH370 2.5 0.0 1.0 O A:HOH379 3.1 10.5 1.0 CE A:LYS71 3.5 5.8 1.0 CG A:GLN75 3.6 1.9 1.0 CG A:LYS71 3.8 1.8 1.0 NE2 A:GLN75 4.1 7.7 1.0 CD A:GLN75 4.1 7.3 1.0 OD2 S:ASP42 4.1 20.0 1.0 CD A:LYS71 4.3 4.4 1.0 OD1 S:ASP42 4.3 9.6 1.0 NZ F:LYS146 4.4 4.0 1.0 CG F:LYS146 4.5 1.0 1.0 CE F:LYS146 4.5 4.0 1.0 O A:LYS71 4.6 0.6 1.0 CG S:ASP42 4.7 9.1 1.0 CB A:GLN75 4.9 0.9 1.0 O F:HOH322 5.0 0.0 1.0

H.Fan, B.Wang, Y.Zhang, Y.Zhu, B.Song, H.Xu, Y.Zhai, M.Qiao, F.Sun. A Cryo-Electron Microscopy Support Film Formed By 2D Crystals of Hydrophobin Hfbi. Nat Commun V. 12 7257 2021.
ISSN: ESSN 2041-1723
PubMed: 34907237
DOI: 10.1038/S41467-021-27596-8