Zinc in PDB 7qix: Specific Features and Methylation Sites of A Plant Ribosome. 40S Body Ribosomal Subunit.

The structure of Specific Features and Methylation Sites of A Plant Ribosome. 40S Body Ribosomal Subunit. also contains other interesting chemical elements:

Potassium	(K)	19 atoms
Magnesium	(Mg)	60 atoms

The binding sites of Zinc atom in the Specific Features and Methylation Sites of A Plant Ribosome. 40S Body Ribosomal Subunit. (pdb code 7qix). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Specific Features and Methylation Sites of A Plant Ribosome. 40S Body Ribosomal Subunit., PDB code: 7qix:

Zinc binding site 1 out of 1 in the Specific Features and Methylation Sites of A Plant Ribosome. 40S Body Ribosomal Subunit.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Specific Features and Methylation Sites of A Plant Ribosome. 40S Body Ribosomal Subunit. within 5.0Å range: probe atom residue distance (Å) B Occ N:Zn201 b:35.7 occ:1.00 SG N:CYS23 2.3 7.8 1.0 SG N:CYS77 2.3 7.3 1.0 SG N:CYS26 2.3 8.7 1.0 SG N:CYS74 2.3 7.3 1.0 HB2 N:CYS77 2.9 7.3 1.0 H N:CYS26 3.0 8.7 1.0 HB3 N:CYS23 3.0 7.8 1.0 CB N:CYS23 3.1 7.8 1.0 HB2 N:CYS23 3.2 7.8 1.0 H N:CYS74 3.2 7.3 1.0 CB N:CYS77 3.2 7.3 1.0 HB3 N:CYS74 3.3 7.3 1.0 HB3 N:ASN25 3.4 9.7 1.0 CB N:CYS74 3.4 7.3 1.0 HB3 N:CYS26 3.5 8.7 1.0 CB N:CYS26 3.5 8.7 1.0 H N:CYS77 3.7 7.3 1.0 HB3 N:LYS28 3.7 7.4 1.0 N N:CYS26 3.7 8.7 1.0 HB3 N:CYS77 3.8 7.3 1.0 H N:LYS28 3.9 7.4 1.0 N N:CYS74 3.9 7.3 1.0 CA N:CYS26 4.2 8.7 1.0 HB2 N:LYS28 4.2 7.4 1.0 HB2 N:CYS74 4.2 7.3 1.0 H N:ASN25 4.3 9.7 1.0 CA N:CYS74 4.3 7.3 1.0 N N:CYS77 4.3 7.3 1.0 HB2 N:CYS26 4.3 8.7 1.0 CB N:ASN25 4.4 9.7 1.0 CA N:CYS77 4.4 7.3 1.0 H N:GLY27 4.4 6.8 1.0 CB N:LYS28 4.4 7.4 1.0 CA N:CYS23 4.6 7.8 1.0 HA N:TYR73 4.7 9.5 1.0 N N:LYS28 4.7 7.4 1.0 HB2 N:SER76 4.7 7.2 1.0 HB2 N:ASN25 4.8 9.7 1.0 N N:GLY27 4.8 6.8 1.0 HA N:CYS77 4.8 7.3 1.0 C N:ASN25 4.8 9.7 1.0 HD3 N:LYS28 4.8 7.4 1.0 C N:CYS26 4.8 8.7 1.0 C N:CYS74 4.9 7.3 1.0 HA N:CYS23 4.9 7.8 1.0 N N:ASN25 4.9 9.7 1.0 CA N:ASN25 4.9 9.7 1.0 O N:CYS74 5.0 7.3 1.0 HD2 N:LYS28 5.0 7.4 1.0

P.Cottilli, Y.Itoh, Y.Nobe, A.S.Petrov, P.Lison, M.Taoka, A.Amunts. Cryo-Em Structure and Rrna Modification Sites of A Plant Ribosome. Plant Commun. V. 3 00342 2022.
ISSN: ISSN 2590-3462
PubMed: 35643637
DOI: 10.1016/J.XPLC.2022.100342