Zinc in PDB 7p4j: Crystal Structure of Autotaxin and Tetrahydrocannabinol

Enzymatic activity of Crystal Structure of Autotaxin and Tetrahydrocannabinol

All present enzymatic activity of Crystal Structure of Autotaxin and Tetrahydrocannabinol:
3.1.4.39;

Protein crystallography data

The structure of Crystal Structure of Autotaxin and Tetrahydrocannabinol, PDB code: 7p4j was solved by M.C.Eymery, A.A.Mccarthy, J.Hausmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.24 / 1.79
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 53.705, 60.979, 63.603, 103.15, 97.39, 94.23
R / Rfree (%) 18.3 / 24.1

Other elements in 7p4j:

The structure of Crystal Structure of Autotaxin and Tetrahydrocannabinol also contains other interesting chemical elements:

Sodium (Na) 1 atom
Calcium (Ca) 2 atoms
Iodine (I) 19 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Autotaxin and Tetrahydrocannabinol (pdb code 7p4j). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Autotaxin and Tetrahydrocannabinol, PDB code: 7p4j:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7p4j

Go back to Zinc Binding Sites List in 7p4j
Zinc binding site 1 out of 2 in the Crystal Structure of Autotaxin and Tetrahydrocannabinol


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Autotaxin and Tetrahydrocannabinol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn901

b:16.2
occ:0.79
NE2 A:HIS315 2.0 18.5 1.0
CE1 A:HIS474 2.0 20.3 1.0
O3 A:PO4915 2.2 30.2 1.0
OD1 A:ASP311 2.3 18.7 1.0
O2 A:PO4915 2.4 30.5 1.0
OD2 A:ASP311 2.5 22.1 1.0
CG A:ASP311 2.7 20.8 1.0
P A:PO4915 2.8 57.5 1.0
NE2 A:HIS474 2.8 16.9 1.0
CE1 A:HIS315 2.9 18.6 1.0
CD2 A:HIS315 3.0 17.3 1.0
ND1 A:HIS474 3.1 17.6 1.0
O1 A:PO4915 3.8 23.8 1.0
O4 A:PO4915 4.0 43.3 1.0
CD2 A:HIS474 4.0 15.7 1.0
ND1 A:HIS315 4.0 25.1 1.0
CE1 A:HIS359 4.1 17.3 1.0
CG A:HIS315 4.1 21.6 1.0
CG A:HIS474 4.2 13.9 1.0
O A:HOH1013 4.2 34.1 1.0
CB A:ASP311 4.3 18.9 1.0
CE A:MET361 4.4 17.5 1.0
OD1 A:ASP171 4.5 24.5 1.0
NE2 A:HIS359 4.5 20.2 1.0
ZN A:ZN902 4.5 16.5 0.3
OG1 A:THR209 4.6 24.9 1.0
OD1 A:ASP473 5.0 19.9 1.0
O A:ASP311 5.0 19.7 1.0

Zinc binding site 2 out of 2 in 7p4j

Go back to Zinc Binding Sites List in 7p4j
Zinc binding site 2 out of 2 in the Crystal Structure of Autotaxin and Tetrahydrocannabinol


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Autotaxin and Tetrahydrocannabinol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn902

b:16.5
occ:0.30
OD1 A:ASP171 1.9 24.5 1.0
OG1 A:THR209 1.9 24.9 1.0
NE2 A:HIS359 2.0 20.2 1.0
OD2 A:ASP358 2.3 23.9 1.0
CG A:ASP171 2.5 23.3 1.0
OD2 A:ASP171 2.7 29.9 1.0
CE1 A:HIS359 2.8 17.3 1.0
CD2 A:HIS359 3.0 17.5 1.0
CB A:THR209 3.0 21.7 1.0
O3 A:PO4915 3.0 30.2 1.0
CG A:ASP358 3.1 17.2 1.0
O A:HOH1013 3.2 34.1 1.0
OD1 A:ASP358 3.4 19.6 1.0
CA A:THR209 3.4 16.1 1.0
CG2 A:THR209 3.4 20.1 1.0
CB A:ASP171 3.8 15.4 1.0
N A:THR209 3.9 14.2 1.0
ND1 A:HIS359 3.9 16.4 1.0
CG A:HIS359 4.0 16.4 1.0
N A:GLY172 4.0 17.0 1.0
O1 A:PO4915 4.1 23.8 1.0
OD1 A:ASP311 4.1 18.7 1.0
P A:PO4915 4.2 57.5 1.0
CA A:ASP171 4.2 17.5 1.0
NE2 A:HIS474 4.3 16.9 1.0
CG A:ASP311 4.3 20.8 1.0
CB A:ASP358 4.4 13.4 1.0
C A:ASP171 4.4 20.2 1.0
ZN A:ZN901 4.5 16.2 0.8
OD2 A:ASP311 4.7 22.1 1.0
C A:LYS208 4.7 17.5 1.0
C A:THR209 4.8 13.8 1.0
CE1 A:HIS474 4.8 20.3 1.0
CA A:GLY172 4.8 16.2 1.0
O4 A:PO4915 4.9 43.3 1.0
CB A:ASP311 4.9 18.9 1.0
OH A:TYR306 5.0 30.7 1.0
CD2 A:HIS474 5.0 15.7 1.0

Reference:

M.C.Eymery, A.A.Andrew, J.Hausmann. Linking the Endocannabinoid System and Medicinal Cannabis to Autotaxin-Lysophosphatic Acid Signaling To Be Published.
Page generated: Sat Apr 8 01:18:33 2023

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