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Zinc in PDB 7ouh: Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir

Other elements in 7ouh:

The structure of Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Fluorine (F) 6 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir (pdb code 7ouh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir, PDB code: 7ouh:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 7ouh

Go back to Zinc Binding Sites List in 7ouh
Zinc binding site 1 out of 4 in the Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1000

b:82.4
occ:1.00
CE1 D:HIS12 1.9 43.0 1.0
ND1 D:HIS12 2.0 43.0 1.0
NE2 D:HIS8 2.0 40.6 1.0
SG D:CYS35 2.3 69.7 1.0
SG D:CYS38 2.3 63.6 1.0
CD2 D:HIS8 2.6 40.6 1.0
NE2 D:HIS12 3.0 43.0 1.0
CE1 D:HIS8 3.1 40.6 1.0
CG D:HIS12 3.1 43.0 1.0
CB D:CYS35 3.3 69.7 1.0
CB D:CYS38 3.6 63.6 1.0
CD2 D:HIS12 3.6 43.0 1.0
CG D:HIS8 3.8 40.6 1.0
ND1 D:HIS8 3.9 40.6 1.0
O D:HIS8 4.1 40.6 1.0
CB D:HIS12 4.2 43.0 1.0
N D:CYS38 4.3 63.6 1.0
CA D:HIS12 4.4 43.0 1.0
CA D:CYS38 4.6 63.6 1.0
CA D:CYS35 4.7 69.7 1.0
C D:HIS8 4.9 40.6 1.0

Zinc binding site 2 out of 4 in 7ouh

Go back to Zinc Binding Sites List in 7ouh
Zinc binding site 2 out of 4 in the Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn301

b:57.7
occ:1.00
ND1 E:HIS12 2.0 28.6 1.0
NE2 E:HIS8 2.0 17.6 1.0
SG E:CYS35 2.3 19.0 1.0
SG E:CYS38 2.3 18.1 1.0
CE1 E:HIS12 2.3 28.6 1.0
CD2 E:HIS8 2.4 17.6 1.0
CE1 E:HIS8 3.2 17.6 1.0
CG E:HIS12 3.3 28.6 1.0
CB E:CYS35 3.3 19.0 1.0
NE2 E:HIS12 3.6 28.6 1.0
CG E:HIS8 3.6 17.6 1.0
CB E:CYS38 3.8 18.1 1.0
O E:HIS8 3.9 17.6 1.0
ND1 E:HIS8 4.0 17.6 1.0
CD2 E:HIS12 4.1 28.6 1.0
CB E:HIS12 4.2 28.6 1.0
CA E:HIS12 4.3 28.6 1.0
N E:CYS38 4.5 18.1 1.0
CA E:CYS35 4.6 19.0 1.0
C E:HIS8 4.6 17.6 1.0
CA E:CYS38 4.7 18.1 1.0
CB E:HIS8 4.9 17.6 1.0

Zinc binding site 3 out of 4 in 7ouh

Go back to Zinc Binding Sites List in 7ouh
Zinc binding site 3 out of 4 in the Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1000

b:88.7
occ:1.00
CE1 A:HIS12 1.9 41.4 1.0
ND1 A:HIS12 2.0 41.4 1.0
NE2 A:HIS8 2.0 39.4 1.0
SG A:CYS35 2.3 67.2 1.0
SG A:CYS38 2.3 61.9 1.0
CD2 A:HIS8 2.6 39.4 1.0
NE2 A:HIS12 3.0 41.4 1.0
CE1 A:HIS8 3.1 39.4 1.0
CG A:HIS12 3.2 41.4 1.0
CB A:CYS35 3.3 67.2 1.0
CB A:CYS38 3.6 61.9 1.0
CD2 A:HIS12 3.6 41.4 1.0
CG A:HIS8 3.8 39.4 1.0
ND1 A:HIS8 3.9 39.4 1.0
O A:HIS8 4.1 39.4 1.0
CB A:HIS12 4.2 41.4 1.0
N A:CYS38 4.3 61.9 1.0
CA A:HIS12 4.4 41.4 1.0
CA A:CYS38 4.6 61.9 1.0
CA A:CYS35 4.7 67.2 1.0
C A:HIS8 4.9 39.4 1.0

Zinc binding site 4 out of 4 in 7ouh

Go back to Zinc Binding Sites List in 7ouh
Zinc binding site 4 out of 4 in the Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:55.6
occ:1.00
ND1 B:HIS12 2.0 28.6 1.0
NE2 B:HIS8 2.0 19.3 1.0
SG B:CYS35 2.3 20.3 1.0
SG B:CYS38 2.3 18.6 1.0
CE1 B:HIS12 2.3 28.6 1.0
CD2 B:HIS8 2.4 19.3 1.0
CE1 B:HIS8 3.2 19.3 1.0
CG B:HIS12 3.3 28.6 1.0
CB B:CYS35 3.3 20.3 1.0
NE2 B:HIS12 3.6 28.6 1.0
CG B:HIS8 3.6 19.3 1.0
CB B:CYS38 3.8 18.6 1.0
O B:HIS8 3.9 19.3 1.0
ND1 B:HIS8 4.0 19.3 1.0
CD2 B:HIS12 4.1 28.6 1.0
CB B:HIS12 4.2 28.6 1.0
CA B:HIS12 4.3 28.6 1.0
N B:CYS38 4.5 18.6 1.0
CA B:CYS35 4.6 20.3 1.0
C B:HIS8 4.6 19.3 1.0
CA B:CYS38 4.7 18.6 1.0
CB B:HIS8 4.9 19.3 1.0

Reference:

M.S.Barski, T.Vanzo, X.Zhao, S.J.Smith, A.Ballandras-Colas, N.B.Cronin, V.E.Pye, S.H.Hughes, T.R.Burke, P.Cherepanov, G.N.Maertens. Structural Basis For the Inhibition of Htlv-1 Integration Inferred From Cryo-Em Deltaretroviral Intasome Structures Nat Commun 2021.
ISSN: ESSN 2041-1723
Page generated: Sun Aug 22 09:53:08 2021

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