Zinc in PDB 7ouh: Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir

The structure of Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir also contains other interesting chemical elements:

Magnesium	(Mg)	4 atoms
Fluorine	(F)	6 atoms

The binding sites of Zinc atom in the Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir (pdb code 7ouh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir, PDB code: 7ouh:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1000 b:82.4 occ:1.00 CE1 D:HIS12 1.9 43.0 1.0 ND1 D:HIS12 2.0 43.0 1.0 NE2 D:HIS8 2.0 40.6 1.0 SG D:CYS35 2.3 69.7 1.0 SG D:CYS38 2.3 63.6 1.0 CD2 D:HIS8 2.6 40.6 1.0 NE2 D:HIS12 3.0 43.0 1.0 CE1 D:HIS8 3.1 40.6 1.0 CG D:HIS12 3.1 43.0 1.0 CB D:CYS35 3.3 69.7 1.0 CB D:CYS38 3.6 63.6 1.0 CD2 D:HIS12 3.6 43.0 1.0 CG D:HIS8 3.8 40.6 1.0 ND1 D:HIS8 3.9 40.6 1.0 O D:HIS8 4.1 40.6 1.0 CB D:HIS12 4.2 43.0 1.0 N D:CYS38 4.3 63.6 1.0 CA D:HIS12 4.4 43.0 1.0 CA D:CYS38 4.6 63.6 1.0 CA D:CYS35 4.7 69.7 1.0 C D:HIS8 4.9 40.6 1.0

Zinc binding site 2 out of 4 in the Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn301 b:57.7 occ:1.00 ND1 E:HIS12 2.0 28.6 1.0 NE2 E:HIS8 2.0 17.6 1.0 SG E:CYS35 2.3 19.0 1.0 SG E:CYS38 2.3 18.1 1.0 CE1 E:HIS12 2.3 28.6 1.0 CD2 E:HIS8 2.4 17.6 1.0 CE1 E:HIS8 3.2 17.6 1.0 CG E:HIS12 3.3 28.6 1.0 CB E:CYS35 3.3 19.0 1.0 NE2 E:HIS12 3.6 28.6 1.0 CG E:HIS8 3.6 17.6 1.0 CB E:CYS38 3.8 18.1 1.0 O E:HIS8 3.9 17.6 1.0 ND1 E:HIS8 4.0 17.6 1.0 CD2 E:HIS12 4.1 28.6 1.0 CB E:HIS12 4.2 28.6 1.0 CA E:HIS12 4.3 28.6 1.0 N E:CYS38 4.5 18.1 1.0 CA E:CYS35 4.6 19.0 1.0 C E:HIS8 4.6 17.6 1.0 CA E:CYS38 4.7 18.1 1.0 CB E:HIS8 4.9 17.6 1.0

Zinc binding site 3 out of 4 in the Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1000 b:88.7 occ:1.00 CE1 A:HIS12 1.9 41.4 1.0 ND1 A:HIS12 2.0 41.4 1.0 NE2 A:HIS8 2.0 39.4 1.0 SG A:CYS35 2.3 67.2 1.0 SG A:CYS38 2.3 61.9 1.0 CD2 A:HIS8 2.6 39.4 1.0 NE2 A:HIS12 3.0 41.4 1.0 CE1 A:HIS8 3.1 39.4 1.0 CG A:HIS12 3.2 41.4 1.0 CB A:CYS35 3.3 67.2 1.0 CB A:CYS38 3.6 61.9 1.0 CD2 A:HIS12 3.6 41.4 1.0 CG A:HIS8 3.8 39.4 1.0 ND1 A:HIS8 3.9 39.4 1.0 O A:HIS8 4.1 39.4 1.0 CB A:HIS12 4.2 41.4 1.0 N A:CYS38 4.3 61.9 1.0 CA A:HIS12 4.4 41.4 1.0 CA A:CYS38 4.6 61.9 1.0 CA A:CYS35 4.7 67.2 1.0 C A:HIS8 4.9 39.4 1.0

Zinc binding site 4 out of 4 in the Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor Bictegravir within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:55.6 occ:1.00 ND1 B:HIS12 2.0 28.6 1.0 NE2 B:HIS8 2.0 19.3 1.0 SG B:CYS35 2.3 20.3 1.0 SG B:CYS38 2.3 18.6 1.0 CE1 B:HIS12 2.3 28.6 1.0 CD2 B:HIS8 2.4 19.3 1.0 CE1 B:HIS8 3.2 19.3 1.0 CG B:HIS12 3.3 28.6 1.0 CB B:CYS35 3.3 20.3 1.0 NE2 B:HIS12 3.6 28.6 1.0 CG B:HIS8 3.6 19.3 1.0 CB B:CYS38 3.8 18.6 1.0 O B:HIS8 3.9 19.3 1.0 ND1 B:HIS8 4.0 19.3 1.0 CD2 B:HIS12 4.1 28.6 1.0 CB B:HIS12 4.2 28.6 1.0 CA B:HIS12 4.3 28.6 1.0 N B:CYS38 4.5 18.6 1.0 CA B:CYS35 4.6 20.3 1.0 C B:HIS8 4.6 19.3 1.0 CA B:CYS38 4.7 18.6 1.0 CB B:HIS8 4.9 19.3 1.0

M.S.Barski, T.Vanzo, X.Zhao, S.J.Smith, A.Ballandras-Colas, N.B.Cronin, V.E.Pye, S.H.Hughes, T.R.Burke, P.Cherepanov, G.N.Maertens. Structural Basis For the Inhibition of Htlv-1 Integration Inferred From Cryo-Em Deltaretroviral Intasome Structures Nat Commun 2021.
ISSN: ESSN 2041-1723