Zinc in PDB 7ouf: Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor XZ450

Other elements in 7ouf:

The structure of Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor XZ450 also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Fluorine (F) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor XZ450 (pdb code 7ouf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor XZ450, PDB code: 7ouf:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 7ouf

Go back to Zinc Binding Sites List in 7ouf
Zinc binding site 1 out of 4 in the Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor XZ450


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor XZ450 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1000

b:75.8
occ:1.00
ND1 D:HIS12 2.0 35.1 1.0
NE2 D:HIS8 2.0 24.9 1.0
CE1 D:HIS12 2.1 35.1 1.0
SG D:CYS35 2.3 67.9 1.0
SG D:CYS38 2.3 71.8 1.0
CD2 D:HIS8 2.7 24.9 1.0
CB D:CYS35 3.0 67.9 1.0
CE1 D:HIS8 3.1 24.9 1.0
CG D:HIS12 3.2 35.1 1.0
NE2 D:HIS12 3.3 35.1 1.0
CB D:CYS38 3.8 71.8 1.0
CD2 D:HIS12 3.8 35.1 1.0
CG D:HIS8 3.9 24.9 1.0
ND1 D:HIS8 4.1 24.9 1.0
CB D:HIS12 4.2 35.1 1.0
O D:HIS8 4.4 24.9 1.0
CA D:HIS12 4.4 35.1 1.0
CA D:CYS35 4.5 67.9 1.0
N D:CYS38 4.6 71.8 1.0
CA D:CYS38 4.8 71.8 1.0

Zinc binding site 2 out of 4 in 7ouf

Go back to Zinc Binding Sites List in 7ouf
Zinc binding site 2 out of 4 in the Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor XZ450


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor XZ450 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn301

b:40.4
occ:1.00
ND1 E:HIS12 2.0 10.8 1.0
NE2 E:HIS8 2.0 12.4 1.0
SG E:CYS35 2.3 18.6 1.0
SG E:CYS38 2.3 10.8 1.0
CE1 E:HIS12 2.6 10.8 1.0
CD2 E:HIS8 2.9 12.4 1.0
CE1 E:HIS8 3.0 12.4 1.0
CB E:CYS35 3.1 18.6 1.0
CG E:HIS12 3.3 10.8 1.0
CB E:CYS38 3.4 10.8 1.0
NE2 E:HIS12 3.9 10.8 1.0
CB E:HIS12 3.9 10.8 1.0
CG E:HIS8 4.0 12.4 1.0
ND1 E:HIS8 4.0 12.4 1.0
N E:CYS38 4.1 10.8 1.0
CD2 E:HIS12 4.2 10.8 1.0
CA E:HIS12 4.2 10.8 1.0
CA E:CYS38 4.3 10.8 1.0
O E:HIS8 4.5 12.4 1.0
CA E:CYS35 4.6 18.6 1.0
CB E:ALA37 5.0 10.8 1.0

Zinc binding site 3 out of 4 in 7ouf

Go back to Zinc Binding Sites List in 7ouf
Zinc binding site 3 out of 4 in the Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor XZ450


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor XZ450 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1000

b:74.1
occ:1.00
ND1 A:HIS12 2.0 39.2 1.0
NE2 A:HIS8 2.0 16.0 1.0
CE1 A:HIS12 2.1 39.2 1.0
SG A:CYS35 2.3 59.7 1.0
SG A:CYS38 2.3 61.2 1.0
CD2 A:HIS8 2.7 16.0 1.0
CB A:CYS35 3.0 59.7 1.0
CE1 A:HIS8 3.1 16.0 1.0
CG A:HIS12 3.2 39.2 1.0
NE2 A:HIS12 3.3 39.2 1.0
CB A:CYS38 3.8 61.2 1.0
CD2 A:HIS12 3.8 39.2 1.0
CG A:HIS8 3.9 16.0 1.0
ND1 A:HIS8 4.1 16.0 1.0
CB A:HIS12 4.2 39.2 1.0
O A:HIS8 4.4 16.0 1.0
CA A:HIS12 4.4 39.2 1.0
CA A:CYS35 4.5 59.7 1.0
N A:CYS38 4.6 61.2 1.0
CA A:CYS38 4.8 61.2 1.0

Zinc binding site 4 out of 4 in 7ouf

Go back to Zinc Binding Sites List in 7ouf
Zinc binding site 4 out of 4 in the Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor XZ450


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of the Stlv Intasome:B56 Complex Bound to the Strand- Transfer Inhibitor XZ450 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:39.9
occ:1.00
ND1 B:HIS12 2.0 10.1 1.0
NE2 B:HIS8 2.0 12.5 1.0
SG B:CYS35 2.3 23.5 1.0
SG B:CYS38 2.3 10.8 1.0
CE1 B:HIS12 2.6 10.1 1.0
CD2 B:HIS8 2.9 12.5 1.0
CE1 B:HIS8 3.0 12.5 1.0
CB B:CYS35 3.1 23.5 1.0
CG B:HIS12 3.3 10.1 1.0
CB B:CYS38 3.4 10.8 1.0
NE2 B:HIS12 3.9 10.1 1.0
CB B:HIS12 3.9 10.1 1.0
CG B:HIS8 4.0 12.5 1.0
ND1 B:HIS8 4.0 12.5 1.0
N B:CYS38 4.1 10.8 1.0
CD2 B:HIS12 4.2 10.1 1.0
CA B:HIS12 4.2 10.1 1.0
CA B:CYS38 4.3 10.8 1.0
O B:HIS8 4.5 12.5 1.0
CA B:CYS35 4.6 23.5 1.0
CB B:ALA37 5.0 10.8 1.0

Reference:

M.S.Barski, T.Vanzo, X.Zhao, S.J.Smith, A.Ballandras-Colas, N.B.Cronin, V.E.Pye, S.H.Hughes, T.R.Burke, P.Cherepanov, G.N.Maertens. Structural Basis For the Inhibition of Htlv-1 Integration Inferred From Cryo-Em Deltaretroviral Intasome Structures Nat Commun 2021.
ISSN: ESSN 2041-1723
Page generated: Sun Aug 22 09:53:07 2021

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