Zinc in PDB 7mma: Crystal Structure of Hcv NS3/4A Protease in Complex with NR01-145

Protein crystallography data

The structure of Crystal Structure of Hcv NS3/4A Protease in Complex with NR01-145, PDB code: 7mma was solved by J.Zephyr, C.A.Schiffer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.04 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 54.083, 58.504, 59.688, 90, 90, 90
R / Rfree (%) 14.4 / 18.1

Other elements in 7mma:

The structure of Crystal Structure of Hcv NS3/4A Protease in Complex with NR01-145 also contains other interesting chemical elements:

Fluorine (F) 3 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Hcv NS3/4A Protease in Complex with NR01-145 (pdb code 7mma). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Hcv NS3/4A Protease in Complex with NR01-145, PDB code: 7mma:

Zinc binding site 1 out of 1 in 7mma

Go back to Zinc Binding Sites List in 7mma
Zinc binding site 1 out of 1 in the Crystal Structure of Hcv NS3/4A Protease in Complex with NR01-145


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Hcv NS3/4A Protease in Complex with NR01-145 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1201

b:13.1
occ:1.00
ND1 A:HIS1149 2.1 12.8 1.0
SG A:CYS1099 2.3 11.9 1.0
SG A:CYS1145 2.3 9.8 1.0
SG A:CYS1097 2.3 11.2 1.0
HB2 A:HIS1149 2.8 13.8 1.0
HB2 A:CYS1099 2.9 12.7 1.0
CE1 A:HIS1149 3.1 14.5 1.0
CG A:HIS1149 3.1 13.7 1.0
CB A:CYS1099 3.2 10.6 1.0
HE1 A:HIS1149 3.2 17.4 1.0
HB3 A:CYS1145 3.2 10.1 1.0
H A:CYS1099 3.2 12.4 1.0
CB A:CYS1145 3.3 8.4 1.0
HA A:CYS1097 3.3 12.0 1.0
CB A:HIS1149 3.4 11.5 1.0
CB A:CYS1097 3.4 10.6 1.0
HB2 A:CYS1145 3.4 10.1 1.0
HB2 A:CYS1097 3.4 12.7 1.0
HB3 A:ALA1147 3.5 16.3 1.0
H A:THR1098 3.8 11.7 1.0
CA A:CYS1097 3.9 10.0 1.0
N A:CYS1099 3.9 10.3 1.0
H A:HIS1149 3.9 11.4 1.0
HB3 A:CYS1099 3.9 12.7 1.0
HB3 A:HIS1149 4.0 13.8 1.0
CA A:CYS1099 4.2 8.6 1.0
NE2 A:HIS1149 4.2 17.8 1.0
CD2 A:HIS1149 4.2 18.5 1.0
HB3 A:CYS1097 4.3 12.7 1.0
H A:ALA1147 4.3 12.4 1.0
N A:THR1098 4.3 9.7 1.0
CB A:ALA1147 4.4 13.5 1.0
O A:HOH1377 4.4 21.3 1.0
C A:CYS1097 4.5 11.1 1.0
CA A:HIS1149 4.6 9.1 1.0
N A:HIS1149 4.6 9.5 1.0
HA A:CYS1099 4.6 10.3 1.0
HB2 A:ALA1147 4.6 16.3 1.0
H A:CYS1145 4.7 10.1 1.0
CA A:CYS1145 4.7 7.8 1.0
HD2 A:PRO1146 4.8 14.2 1.0
O A:HOH1443 4.8 25.3 1.0
HG22 A:VAL1151 4.9 12.6 1.0
HB1 A:ALA1147 4.9 16.3 1.0
HE2 A:HIS1149 4.9 21.4 1.0
C A:THR1098 5.0 12.7 1.0

Reference:

J.Zephyr, D.Nageswara Rao, S.V.Vo, M.Henes, K.Kosovrasti, A.N.Matthew, A.K.Hedger, J.Timm, E.T.Chan, A.Ali, N.Kurt Yilmaz, C.A.Schiffer. Deciphering the Molecular Mechanism of Hcv Protease Inhibitor Fluorination As A General Approach to Avoid Drug Resistance. J.Mol.Biol. V. 434 67503 2022.
ISSN: ESSN 1089-8638
PubMed: 35183560
DOI: 10.1016/J.JMB.2022.167503
Page generated: Sat Apr 8 00:52:32 2023

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