Zinc in PDB 7koa: Room Temperature Structure of Sars-Cov-2 NSP10/16 Methyltransferase in A Complex with Cap-0 and Sam Determined By Pink-Beam Serial Crystallography

Protein crystallography data

The structure of Room Temperature Structure of Sars-Cov-2 NSP10/16 Methyltransferase in A Complex with Cap-0 and Sam Determined By Pink-Beam Serial Crystallography, PDB code: 7koa was solved by M.Wilamowski, D.A.Sherrell, G.Minasov, L.Shuvalova, A.Lavens, R.Henning, N.Maltseva, M.Rosas-Lemus, Y.Kim, K.J.F.Satchell, V.Srajer, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.59 / 2.40
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 170.860, 170.860, 52.797, 90.00, 90.00, 120.00
R / Rfree (%) 23.4 / 27.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Room Temperature Structure of Sars-Cov-2 NSP10/16 Methyltransferase in A Complex with Cap-0 and Sam Determined By Pink-Beam Serial Crystallography (pdb code 7koa). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Room Temperature Structure of Sars-Cov-2 NSP10/16 Methyltransferase in A Complex with Cap-0 and Sam Determined By Pink-Beam Serial Crystallography, PDB code: 7koa:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7koa

Go back to Zinc Binding Sites List in 7koa
Zinc binding site 1 out of 2 in the Room Temperature Structure of Sars-Cov-2 NSP10/16 Methyltransferase in A Complex with Cap-0 and Sam Determined By Pink-Beam Serial Crystallography


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Room Temperature Structure of Sars-Cov-2 NSP10/16 Methyltransferase in A Complex with Cap-0 and Sam Determined By Pink-Beam Serial Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:40.2
occ:1.00
NE2 B:HIS83 2.1 49.9 1.0
SG B:CYS74 2.3 30.1 1.0
SG B:CYS90 2.3 51.1 1.0
SG B:CYS77 2.3 32.5 1.0
CE1 B:HIS83 3.1 48.6 1.0
CD2 B:HIS83 3.1 52.6 1.0
CB B:CYS74 3.2 33.3 1.0
CB B:CYS90 3.3 55.2 1.0
CB B:CYS77 3.4 32.5 1.0
N B:CYS77 3.6 36.7 1.0
CA B:CYS77 4.0 33.4 1.0
ND1 B:HIS83 4.2 52.1 1.0
CG B:HIS83 4.2 54.4 1.0
CA B:CYS90 4.5 61.4 1.0
CB B:TYR76 4.6 39.8 1.0
CA B:CYS74 4.6 34.3 1.0
C B:TYR76 4.7 38.9 1.0
N B:LYS93 4.9 35.9 1.0

Zinc binding site 2 out of 2 in 7koa

Go back to Zinc Binding Sites List in 7koa
Zinc binding site 2 out of 2 in the Room Temperature Structure of Sars-Cov-2 NSP10/16 Methyltransferase in A Complex with Cap-0 and Sam Determined By Pink-Beam Serial Crystallography


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Room Temperature Structure of Sars-Cov-2 NSP10/16 Methyltransferase in A Complex with Cap-0 and Sam Determined By Pink-Beam Serial Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn202

b:74.8
occ:1.00
SG B:CYS117 2.3 58.6 1.0
SG B:CYS130 2.3 0.3 1.0
SG B:CYS128 2.3 69.1 1.0
SG B:CYS120 2.3 72.2 1.0
CB B:CYS117 3.2 61.9 1.0
CB B:CYS130 3.4 0.5 1.0
N B:CYS120 3.4 69.8 1.0
CB B:CYS120 3.4 71.6 1.0
CB B:CYS128 3.5 71.8 1.0
CA B:CYS120 4.0 68.9 1.0
CB B:VAL119 4.1 76.2 1.0
CA B:CYS128 4.2 73.9 1.0
N B:CYS130 4.3 0.6 1.0
CA B:CYS130 4.4 0.9 1.0
C B:VAL119 4.4 73.2 1.0
CA B:VAL119 4.6 75.3 1.0
N B:GLY121 4.6 62.2 1.0
N B:SER129 4.6 85.1 1.0
N B:VAL119 4.6 75.1 1.0
CA B:CYS117 4.7 59.7 1.0
C B:CYS120 4.7 64.4 1.0
CG1 B:VAL119 4.7 71.9 1.0
C B:CYS128 4.8 77.0 1.0

Reference:

M.Wilamowski, D.A.Sherrell, G.Minasov, L.Shuvalova, A.Lavens, R.Henning, N.Maltseva, M.Rosas-Lemus, Y.Kim, K.J.F.Satchell, V.Srajer, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Room Temperature Structure of Sars-Cov-2 NSP10/NSP16 Methyltransferase in A Complex with Cap-0 and Sam Determined By Pink-Beam Serial Crystallography To Be Published.
Page generated: Wed Dec 16 14:04:21 2020

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