Zinc in PDB 7cyi: Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua

The structure of Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua, PDB code: 7cyi was solved by X.Feng, S.Fan, G.Lv, M.Li, G.Wu, Y.Jin, Z.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.96 / 2.95
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	77.533, 78.49, 102.441, 71.88, 74.02, 59.97
R / Rfree (%)	23.2 / 27.5

The binding sites of Zinc atom in the Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua (pdb code 7cyi). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua, PDB code: 7cyi:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in the Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:44.0 occ:1.00 OE1 A:GLU70 2.1 43.2 1.0 NE2 A:HIS69 2.2 43.2 1.0 SG A:CYS48 2.3 45.4 1.0 SG A:CYS177 2.5 40.2 1.0 CE1 A:HIS69 2.6 43.7 1.0 CD A:GLU70 2.8 43.0 1.0 CB A:CYS48 3.1 43.9 1.0 CG A:GLU70 3.2 42.6 1.0 CB A:CYS177 3.5 41.1 1.0 CD2 A:HIS69 3.5 43.3 1.0 OE2 A:GLU70 3.7 43.1 1.0 ND1 A:HIS69 3.8 43.9 1.0 OG1 A:THR50 4.1 45.7 1.0 CG A:HIS69 4.3 43.7 1.0 CA A:CYS48 4.3 44.1 1.0 N A:CYS48 4.4 44.0 1.0 NZ A:LYS373 4.5 41.9 1.0 O A:CYS177 4.6 42.2 1.0 C A:CYS177 4.6 40.0 1.0 CA A:CYS177 4.7 40.7 1.0 CB A:GLU70 4.8 43.4 1.0 CB A:THR50 4.8 45.5 1.0 C A:LEU47 5.0 43.8 1.0

Zinc binding site 2 out of 8 in the Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn402 b:47.6 occ:1.00 SG A:CYS102 2.3 46.6 1.0 SG A:CYS113 2.4 45.8 1.0 SG A:CYS105 2.5 47.0 1.0 CB A:CYS99 2.6 47.9 1.0 CB A:CYS113 3.1 44.8 1.0 N A:CYS99 3.2 46.9 1.0 CB A:CYS102 3.2 48.8 1.0 CA A:CYS99 3.4 47.3 1.0 N A:GLY100 3.5 49.4 1.0 SG A:CYS99 3.5 49.5 1.0 CB A:CYS105 3.5 47.7 1.0 CA A:CYS113 3.9 42.2 1.0 C A:CYS99 3.9 48.1 1.0 N A:CYS102 3.9 50.7 1.0 N A:HIS114 4.1 45.1 1.0 CA A:CYS102 4.1 49.3 1.0 N A:CYS105 4.4 46.3 1.0 C A:GLU98 4.4 46.2 1.0 C A:CYS113 4.5 44.2 1.0 N A:VAL115 4.5 45.8 1.0 CA A:CYS105 4.6 46.8 1.0 CA A:GLY100 4.6 49.9 1.0 N A:GLN101 4.7 50.7 1.0 C A:CYS102 4.8 48.0 1.0 O A:CYS102 4.8 47.5 1.0 CB A:VAL115 4.8 47.1 1.0 CA A:GLU98 4.9 44.9 1.0 C A:GLY100 5.0 50.3 1.0

Zinc binding site 3 out of 8 in the Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:45.8 occ:1.00 NE2 B:HIS69 2.1 45.8 1.0 OE2 B:GLU70 2.2 45.2 1.0 SG B:CYS48 2.3 46.0 1.0 SG B:CYS177 2.4 44.3 1.0 CE1 B:HIS69 2.6 45.8 1.0 CB B:CYS177 3.1 44.5 1.0 CD B:GLU70 3.1 45.8 1.0 CB B:CYS48 3.2 45.4 1.0 CD2 B:HIS69 3.3 46.4 1.0 CG B:GLU70 3.5 46.2 1.0 ND1 B:HIS69 3.9 46.1 1.0 OG1 B:THR50 4.1 45.5 1.0 CG B:HIS69 4.2 46.3 1.0 OE1 B:GLU70 4.3 45.8 1.0 N B:GLY178 4.4 44.4 1.0 CA B:CYS48 4.4 45.6 1.0 N B:CYS48 4.5 46.1 1.0 CA B:CYS177 4.6 44.1 1.0 CB B:THR50 4.6 46.3 1.0 C B:CYS177 4.9 44.3 1.0 CB B:GLU70 5.0 46.7 1.0

Zinc binding site 4 out of 8 in the Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn402 b:49.5 occ:1.00 SG B:CYS113 2.3 49.8 1.0 SG B:CYS102 2.4 50.2 1.0 SG B:CYS99 2.5 49.5 1.0 SG B:CYS105 2.5 49.4 1.0 CB B:CYS113 2.9 47.7 1.0 N B:CYS99 3.4 49.4 1.0 CA B:CYS113 3.5 46.9 1.0 CB B:CYS99 3.5 49.8 1.0 CB B:CYS102 3.6 49.8 1.0 N B:GLY100 3.7 49.2 1.0 CB B:CYS105 3.8 48.8 1.0 CA B:CYS99 3.9 49.4 1.0 N B:HIS114 3.9 48.0 1.0 C B:CYS113 4.1 47.8 1.0 N B:CYS102 4.3 50.7 1.0 C B:CYS99 4.3 49.1 1.0 C B:GLU98 4.4 49.1 1.0 N B:VAL115 4.5 49.6 1.0 CA B:CYS102 4.5 50.2 1.0 CG2 B:VAL115 4.5 49.3 1.0 N B:CYS105 4.5 48.5 1.0 CA B:GLU98 4.6 48.8 1.0 N B:CYS113 4.8 45.9 1.0 CA B:GLY100 4.8 49.3 1.0 CA B:CYS105 4.8 48.4 1.0 CB B:VAL115 4.9 49.9 1.0 N B:GLN101 4.9 50.0 1.0 O B:CYS102 5.0 50.0 1.0

Zinc binding site 5 out of 8 in the Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn401 b:41.1 occ:1.00 OE1 C:GLU70 2.1 42.6 1.0 NE2 C:HIS69 2.2 42.3 1.0 SG C:CYS177 2.3 42.4 1.0 CB C:CYS48 2.6 42.3 1.0 SG C:CYS48 2.8 42.4 1.0 CE1 C:HIS69 3.0 42.3 1.0 CB C:CYS177 3.1 42.0 1.0 CD C:GLU70 3.1 42.7 1.0 CD2 C:HIS69 3.3 42.0 1.0 CG C:GLU70 3.6 42.6 1.0 O C:CYS177 3.6 43.6 1.0 C C:CYS177 4.0 43.1 1.0 CA C:CYS48 4.1 42.7 1.0 ND1 C:HIS69 4.2 42.0 1.0 CA C:CYS177 4.2 42.2 1.0 OE2 C:GLU70 4.2 43.0 1.0 CG C:HIS69 4.4 41.9 1.0 OG1 C:THR50 4.6 42.3 1.0 N C:CYS48 4.7 43.2 1.0 N C:GLY178 4.8 43.2 1.0

Zinc binding site 6 out of 8 in the Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn402 b:42.5 occ:1.00 SG C:CYS99 2.3 41.5 1.0 SG C:CYS113 2.4 41.4 1.0 SG C:CYS102 2.5 41.2 1.0 SG C:CYS105 2.9 40.7 1.0 CB C:CYS102 3.1 42.3 1.0 CB C:CYS113 3.4 39.7 1.0 CB C:CYS99 3.7 40.2 1.0 CA C:CYS113 3.7 38.7 1.0 N C:CYS99 3.9 40.4 1.0 N C:GLY100 4.0 41.2 1.0 CG2 C:VAL115 4.0 39.2 1.0 CB C:CYS105 4.0 42.8 1.0 N C:CYS102 4.0 42.8 1.0 N C:HIS114 4.1 39.5 1.0 CA C:CYS102 4.2 42.8 1.0 CA C:CYS99 4.3 40.5 1.0 C C:CYS113 4.4 39.3 1.0 N C:VAL115 4.4 38.9 1.0 CB C:VAL115 4.6 38.9 1.0 C C:CYS99 4.6 41.0 1.0 N C:CYS105 4.7 42.4 1.0 N C:GLN101 4.7 42.3 1.0 C C:GLU98 4.9 40.2 1.0 CA C:CYS105 5.0 42.6 1.0 N C:CYS113 5.0 37.2 1.0 CA C:GLY100 5.0 41.5 1.0

Zinc binding site 7 out of 8 in the Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn401 b:42.7 occ:1.00 OE2 D:GLU70 2.2 41.6 1.0 NE2 D:HIS69 2.2 40.7 1.0 SG D:CYS177 2.4 41.9 1.0 SG D:CYS48 2.9 41.9 1.0 CE1 D:HIS69 2.9 41.4 1.0 CB D:CYS48 2.9 41.9 1.0 CB D:CYS177 3.1 41.6 1.0 CD D:GLU70 3.2 41.6 1.0 CG D:GLU70 3.4 41.6 1.0 CD2 D:HIS69 3.4 40.8 1.0 ND1 D:HIS69 4.0 41.3 1.0 CG D:HIS69 4.3 41.1 1.0 OE1 D:GLU70 4.3 42.2 1.0 CA D:CYS48 4.4 42.7 1.0 CA D:CYS177 4.5 42.2 1.0 N D:GLY178 4.6 42.3 1.0 CB D:THR50 4.7 41.8 1.0 O D:LEU47 4.8 43.1 1.0 CB D:GLU70 4.9 42.6 1.0 C D:CYS177 4.9 42.0 1.0 OG1 D:THR50 4.9 41.6 1.0

Zinc binding site 8 out of 8 in the Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of Alcohol Dehydrogenase 1 From Artemisia Annua within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn402 b:39.7 occ:1.00 SG D:CYS99 2.4 37.3 1.0 SG D:CYS105 2.4 36.8 1.0 SG D:CYS102 2.4 36.1 1.0 SG D:CYS113 2.4 38.2 1.0 CB D:CYS113 3.2 36.7 1.0 CB D:CYS105 3.3 37.1 1.0 CB D:CYS102 3.4 37.4 1.0 N D:CYS99 3.5 38.7 1.0 N D:GLY100 3.5 39.4 1.0 CB D:CYS99 3.6 38.2 1.0 CA D:CYS113 3.8 35.6 1.0 N D:CYS102 3.8 38.7 1.0 CA D:CYS99 3.9 38.3 1.0 N D:HIS114 4.1 36.2 1.0 C D:CYS99 4.1 39.4 1.0 CA D:CYS102 4.2 37.8 1.0 N D:GLN101 4.3 40.9 1.0 C D:CYS113 4.4 36.1 1.0 N D:CYS105 4.4 36.2 1.0 CA D:CYS105 4.4 36.5 1.0 C D:GLU98 4.4 38.0 1.0 CA D:GLY100 4.5 39.6 1.0 N D:VAL115 4.6 36.9 1.0 CG2 D:VAL115 4.6 36.6 1.0 CA D:GLU98 4.7 38.1 1.0 C D:GLY100 4.7 40.6 1.0 CB D:VAL115 4.8 37.3 1.0 C D:GLN101 5.0 40.2 1.0 C D:CYS102 5.0 36.6 1.0

Z.Yang, X.Feng, S.Fan, G.Lv, M.Li, G.Wu, Y.Jin, Z.Yang. N/A N/A.