Zinc in PDB 7b2i: Heterodimeric Trna-Guanine Transglycosylase From Mouse

Enzymatic activity of Heterodimeric Trna-Guanine Transglycosylase From Mouse

All present enzymatic activity of Heterodimeric Trna-Guanine Transglycosylase From Mouse:
2.4.2.29;

Protein crystallography data

The structure of Heterodimeric Trna-Guanine Transglycosylase From Mouse, PDB code: 7b2i was solved by M.Sebastiani, A.Heine, K.Reuter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.17 / 1.65
Space group P 43 2 2
Cell size a, b, c (Å), α, β, γ (°) 100.587, 100.587, 202.235, 90, 90, 90
R / Rfree (%) 17.7 / 20.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Heterodimeric Trna-Guanine Transglycosylase From Mouse (pdb code 7b2i). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Heterodimeric Trna-Guanine Transglycosylase From Mouse, PDB code: 7b2i:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7b2i

Go back to Zinc Binding Sites List in 7b2i
Zinc binding site 1 out of 2 in the Heterodimeric Trna-Guanine Transglycosylase From Mouse


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Heterodimeric Trna-Guanine Transglycosylase From Mouse within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:21.6
occ:1.00
ND1 A:HIS382 2.1 21.0 1.0
SG A:CYS356 2.3 23.2 1.0
SG A:CYS351 2.3 23.1 1.0
SG A:CYS353 2.3 21.4 1.0
CE1 A:HIS382 3.0 22.2 1.0
CB A:CYS351 3.2 22.5 1.0
CB A:CYS356 3.2 21.4 1.0
CG A:HIS382 3.2 19.4 1.0
CB A:CYS353 3.4 25.7 1.0
CB A:HIS382 3.6 18.1 1.0
N A:CYS356 4.0 21.7 1.0
CA A:HIS382 4.0 19.4 1.0
NE2 A:HIS382 4.2 19.8 1.0
N A:CYS353 4.2 23.8 1.0
CA A:CYS356 4.2 19.7 1.0
CD2 A:HIS382 4.3 18.9 1.0
CA A:CYS353 4.3 21.4 1.0
CA A:CYS351 4.5 24.2 1.0
C A:CYS351 4.7 26.2 1.0
O A:HIS382 4.8 19.6 1.0
O A:HOH686 4.8 30.2 1.0
C A:CYS353 4.9 21.9 1.0
O A:CYS353 4.9 24.1 1.0
C A:HIS382 4.9 19.8 1.0
CB A:VAL348 4.9 21.8 1.0
CB A:CYS355 5.0 22.4 1.0

Zinc binding site 2 out of 2 in 7b2i

Go back to Zinc Binding Sites List in 7b2i
Zinc binding site 2 out of 2 in the Heterodimeric Trna-Guanine Transglycosylase From Mouse


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Heterodimeric Trna-Guanine Transglycosylase From Mouse within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn501

b:18.8
occ:1.00
ND1 C:HIS348 2.1 19.7 1.0
SG C:CYS317 2.3 20.6 1.0
SG C:CYS322 2.3 20.0 1.0
SG C:CYS319 2.3 18.8 1.0
CE1 C:HIS348 2.9 18.0 1.0
CB C:CYS317 3.2 19.6 1.0
CG C:HIS348 3.2 16.5 1.0
CB C:CYS322 3.3 17.4 1.0
CB C:CYS319 3.3 19.6 1.0
CB C:HIS348 3.7 17.3 1.0
N C:CYS322 3.9 17.5 1.0
CA C:HIS348 4.1 16.5 1.0
NE2 C:HIS348 4.1 17.3 1.0
CA C:CYS322 4.2 18.2 1.0
N C:CYS319 4.2 21.2 1.0
CA C:CYS319 4.3 18.9 1.0
CD2 C:HIS348 4.3 17.8 1.0
CA C:CYS317 4.5 20.7 1.0
O C:CYS319 4.6 20.9 1.0
O C:CYS317 4.6 24.8 1.0
O C:HOH671 4.6 20.2 1.0
C C:CYS317 4.6 23.8 1.0
C C:CYS319 4.7 19.6 1.0
O C:HIS348 4.7 17.4 1.0
CB C:THR321 4.7 18.6 1.0
C C:HIS348 4.9 18.0 1.0
C C:THR321 4.9 18.2 1.0

Reference:

M.Sebastiani, A.Heine, K.Reuter. Heterodimeric Trna-Guanine Transglycosylase From Mouse To Be Published.
Page generated: Fri Dec 17 11:45:57 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy