Zinc in PDB 7ax5: Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Ensemble Refinement

The structure of Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Ensemble Refinement, PDB code: 7ax5 was solved by A.Dietl, T.Barends, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.40 / 1.76
Space group	P 64
Cell size a, b, c (Å), α, β, γ (°)	76.81, 76.81, 30.9, 90, 90, 120
R / Rfree (%)	17.5 / 23.4

The binding sites of Zinc atom in the Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Ensemble Refinement (pdb code 7ax5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Ensemble Refinement, PDB code: 7ax5:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in the Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Ensemble Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Ensemble Refinement within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:52.7 occ:0.01 OD2 A:ASP40 2.2 49.8 0.0 CG A:ASP40 2.8 50.7 0.0 OD1 A:ASP40 3.4 51.0 0.0 HB3 A:ASP40 3.7 51.7 0.0 CB A:ASP40 3.7 51.7 0.0 HD12 A:LEU42 3.8 55.0 0.0 HB2 A:ASP40 3.8 53.3 0.0 HB2 A:LEU42 3.9 52.6 0.0 HG A:LEU43 4.7 46.9 0.0 CD1 A:LEU42 4.7 55.2 0.0 H A:LEU42 4.8 53.1 0.0 CB A:LEU42 4.8 52.6 0.0 HD12 A:LEU43 4.9 46.0 0.0

Zinc binding site 2 out of 7 in the Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Ensemble Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Ensemble Refinement within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn102 b:39.5 occ:0.01 O A:HOH212 2.1 38.5 0.0 HG3 A:GLU7 4.1 37.9 0.0 HB3 A:ASP3 4.3 41.4 0.0 HB2 A:GLU7 4.4 38.5 0.0 HZ2 A:LYS78 4.4 41.3 0.0 HB3 A:GLU7 4.6 37.8 0.0 HH2 A:TRP26 4.6 38.2 0.0 HA A:GLU4 4.6 39.0 0.0 CB A:GLU7 4.8 37.9 0.0 CG A:GLU7 4.8 37.6 0.0 OE1 A:GLU7 5.0 36.9 0.0

Zinc binding site 3 out of 7 in the Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Ensemble Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Ensemble Refinement within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn103 b:43.3 occ:0.01 OE2 A:GLU19 2.0 41.2 0.0 CD A:GLU19 2.5 40.7 0.0 OE1 A:GLU19 2.9 41.1 0.0 CG A:GLU19 3.6 39.6 0.0 HG2 A:GLU19 3.6 39.4 0.0 HG3 A:GLU19 3.8 40.0 0.0 CB A:GLU19 4.9 38.9 0.0 HB3 A:GLU19 4.9 38.8 0.0

Zinc binding site 4 out of 7 in the Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Ensemble Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Ensemble Refinement within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn104 b:45.0 occ:0.01 OD1 A:ASP2 3.8 43.7 0.0 CG A:ASP2 4.6 42.9 0.0 OD2 A:ASP2 4.9 42.0 0.0

Zinc binding site 5 out of 7 in the Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Ensemble Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Ensemble Refinement within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn105 b:43.1 occ:0.01 OD1 A:ASP30 3.1 44.5 0.0 OD2 A:ASP30 3.1 43.8 0.0 CG A:ASP30 3.5 44.1 0.0 HG3 A:ARG29 4.0 40.2 0.0 HE A:ARG29 4.1 40.0 0.0 HB3 A:SER71 4.2 41.3 0.0 HB2 A:SER71 4.2 42.3 0.0 HD2 A:ARG29 4.4 39.2 0.0 CB A:SER71 4.5 42.0 0.0 NE A:ARG29 4.6 39.5 0.0 OG A:SER71 4.7 43.2 0.0 CD A:ARG29 4.9 38.9 0.0 CG A:ARG29 4.9 39.3 0.0 CB A:ASP30 5.0 44.2 0.0

Zinc binding site 6 out of 7 in the Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Ensemble Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Ensemble Refinement within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn106 b:35.8 occ:0.01 OD2 A:ASP21 2.6 35.3 0.0 HB2 A:ASP21 3.4 35.5 0.0 CG A:ASP21 3.6 35.2 0.0 CB A:ASP21 4.0 35.3 0.0 HA A:ASP21 4.1 35.2 0.0 CA A:ASP21 4.6 35.2 0.0 OD1 A:ASP21 4.6 35.2 0.0 HB3 A:ASP21 4.8 35.5 0.0

Zinc binding site 7 out of 7 in the Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Ensemble Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Anammox-Specific Acyl Carrier Protein From Kuenenia Stuttgartiensis; Ensemble Refinement within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn107 b:60.0 occ:0.01 HB2 A:GLN58 2.7 59.0 0.0 OE2 A:GLU52 2.8 54.3 0.0 HA A:GLN58 3.0 55.4 0.0 H A:ILE59 3.3 54.3 0.0 CB A:GLN58 3.5 58.1 0.0 CA A:GLN58 3.6 55.5 0.0 CD A:GLU52 3.8 52.9 0.0 N A:ILE59 3.8 54.3 0.0 HB3 A:GLN58 3.8 58.5 0.0 OE1 A:GLU52 4.0 53.5 0.0 C A:GLN58 4.1 54.8 0.0 O A:ILE59 4.4 55.7 0.0 C A:ILE59 4.5 55.9 0.0 OE2 A:GLU61 4.6 61.5 0.0 HG3 A:GLU61 4.6 57.8 0.0 HG2 A:GLN58 4.6 59.5 0.0 CG A:GLN58 4.7 59.0 0.0 CA A:ILE59 4.8 54.1 0.0 N A:PRO60 4.9 58.0 0.0 HA A:PRO60 4.9 60.8 0.0 N A:GLN58 4.9 54.2 0.0

A.Dietl, T.R.M.Barends. Dynamics in An Unusual Acyl Carrier Protein From A Ladderane Lipid-Synthesizing Organism. Proteins 2021.
ISSN: ESSN 1097-0134
PubMed: 34310758
DOI: 10.1002/PROT.26187