Zinc in PDB 7a9q: Racemic Compound of Rna Duplexes.

The structure of Racemic Compound of Rna Duplexes., PDB code: 7a9q was solved by W.Rypniewski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.00 / 2.19
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	21.162, 25.836, 38.564, 104.75, 96.56, 92.03
R / Rfree (%)	16.4 / 23.2

The binding sites of Zinc atom in the Racemic Compound of Rna Duplexes. (pdb code 7a9q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the Racemic Compound of Rna Duplexes., PDB code: 7a9q:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn101 b:25.5 occ:0.60 O K:HOH222 1.9 30.1 1.0 O K:HOH214 2.0 22.0 1.0 O K:HOH208 2.0 17.4 1.0 N7 K:G82 2.1 19.9 1.0 O K:HOH215 2.1 19.7 1.0 O K:HOH201 2.5 17.2 1.0 C8 K:G82 3.0 19.3 1.0 C5 K:G82 3.1 17.6 1.0 O6 K:G82 3.5 16.7 1.0 C6 K:G82 3.6 18.3 1.0 O K:HOH217 3.7 35.1 1.0 O K:HOH210 3.8 33.6 1.0 OP2 K:G82 3.9 25.4 1.0 N9 K:G82 4.1 18.9 1.0 C4 K:G82 4.2 17.4 1.0 N7 K:G81 4.3 19.7 1.0 O6 K:G83 4.5 22.2 1.0 C8 K:G81 4.6 19.9 1.0 OP2 K:G81 4.6 32.8 1.0 N7 K:G83 4.6 22.0 1.0 O5' K:G82 4.7 22.0 1.0 C5 K:G81 4.8 18.3 1.0 P K:G82 5.0 24.4 1.0 N1 K:G82 5.0 18.1 1.0

Zinc binding site 2 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ K:Zn102 b:48.4 occ:0.80 O K:HOH203 2.0 24.9 1.0 O K:HOH209 2.2 22.2 1.0 O K:HOH205 2.2 31.1 1.0 O K:HOH224 2.2 36.3 1.0 O K:HOH213 2.5 34.5 1.0 O M:HOH208 3.6 35.9 1.0 N7 K:G85 3.7 22.5 1.0 O K:HOH212 3.9 29.8 1.0 O6 K:G86 4.2 20.1 1.0 N7 K:G86 4.4 18.8 1.0 C8 K:G85 4.5 21.8 1.0 O6 K:G85 4.6 23.0 1.0 C5 K:G85 4.6 19.7 1.0 O2 M:0C79 4.8 17.1 1.0 OP2 K:G85 4.9 33.8 1.0 O K:HOH220 4.9 30.9 1.0 C6 K:G85 5.0 20.6 1.0

Zinc binding site 3 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn101 b:50.3 occ:1.00 O L:HOH206 2.0 33.4 1.0 O L:HOH219 2.0 48.2 1.0 O L:HOH205 2.2 23.0 1.0 O L:HOH231 2.3 40.1 1.0 O L:HOH201 2.3 34.5 1.0 N7 L:G96 3.6 21.1 1.0 O L:HOH217 3.7 32.6 1.0 O6 L:G97 4.1 16.1 1.0 N7 L:G97 4.2 16.0 1.0 C8 L:G96 4.2 21.8 1.0 OP2 L:G96 4.4 25.6 1.0 C5 L:G96 4.7 22.1 1.0 C6 L:G97 4.9 15.2 1.0 O6 L:G96 4.9 24.6 1.0 C5 L:G97 4.9 16.3 1.0

Zinc binding site 4 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn102 b:42.3 occ:0.50 O L:HOH222 2.2 23.6 1.0 O L:HOH230 2.6 39.8 1.0 OP2 L:U95 4.2 19.4 1.0 OP1 L:C94 4.2 16.2 1.0 OP1 L:U95 4.2 23.0 1.0 P L:U95 4.7 21.2 1.0

Zinc binding site 5 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn101 b:30.6 occ:0.60 O M:HOH220 1.9 65.9 1.0 N7 M:0G82 2.0 14.9 1.0 O M:HOH219 2.2 27.9 1.0 O M:HOH206 2.2 21.2 1.0 O M:HOH203 2.3 42.1 1.0 O M:HOH230 2.6 35.9 1.0 C8 M:0G82 2.8 14.8 1.0 C5 M:0G82 3.1 14.7 1.0 O6 M:0G82 3.5 16.5 1.0 C6 M:0G82 3.7 17.1 1.0 N9 M:0G82 4.1 16.1 1.0 O M:HOH216 4.1 30.8 1.0 O M:HOH226 4.1 36.3 1.0 OP1 M:0G82 4.1 23.6 1.0 C4 M:0G82 4.2 15.7 1.0 O N:HOH215 4.2 31.2 1.0 N7 M:0G81 4.3 17.2 1.0 O6 M:0G83 4.4 19.7 1.0 C8 M:0G81 4.7 18.0 1.0 N7 M:0G83 4.7 16.9 1.0 C5 M:0G81 4.7 16.8 1.0 O5' M:0G82 4.7 21.4 1.0 OP1 M:0G81 4.9 29.5 1.0

Zinc binding site 6 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn102 b:41.5 occ:0.80 O M:HOH229 1.9 81.0 1.0 O M:HOH217 2.1 39.0 1.0 O M:HOH204 2.1 38.2 1.0 O M:HOH205 2.3 21.2 1.0 N7 M:0G85 2.9 17.5 1.0 O M:HOH223 3.3 44.1 1.0 C8 M:0G85 3.5 17.9 1.0 OP1 M:0G85 3.8 25.1 1.0 C5 M:0G85 4.0 17.3 1.0 N7 M:0G86 4.2 14.4 1.0 O6 M:0G86 4.2 13.1 1.0 O6 M:0G85 4.3 19.4 1.0 C5 M:0C84 4.4 18.7 1.0 C4 M:0C84 4.5 19.0 1.0 C6 M:0G85 4.5 17.7 1.0 N4 M:0C84 4.7 18.3 1.0 C6 M:0C84 4.7 18.8 1.0 N9 M:0G85 4.8 18.9 1.0 O M:HOH224 4.9 27.4 1.0 O5' M:0G85 4.9 21.9 1.0 C5 M:0G86 5.0 14.0 1.0 C6 M:0G86 5.0 13.7 1.0 N3 M:0C84 5.0 17.9 1.0

Zinc binding site 7 out of 7 in the Racemic Compound of Rna Duplexes.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Racemic Compound of Rna Duplexes. within 5.0Å range: probe atom residue distance (Å) B Occ N:Zn101 b:51.9 occ:1.00 O N:HOH223 1.7 68.1 1.0 O L:HOH228 2.1 33.9 1.0 O L:HOH221 2.1 23.0 1.0 O N:HOH211 2.2 36.1 1.0 O N:HOH210 2.3 33.0 1.0 O N:HOH202 2.5 24.6 1.0 O N:HOH203 3.0 47.2 1.0 N7 N:0G96 3.9 23.4 1.0 N7 N:0G97 4.1 15.5 1.0 O6 N:0G97 4.2 15.2 1.0 OP1 N:0G96 4.6 36.5 1.0 C8 N:0G96 4.6 22.7 1.0 O2 L:C90 4.7 19.3 1.0 O6 N:0G96 4.8 22.5 1.0 C5 N:0G96 4.8 21.1 1.0 C5 N:0G97 4.9 14.9 1.0 C6 N:0G97 4.9 15.2 1.0 C5 N:0U95 4.9 20.4 1.0 C4 N:0U95 5.0 20.2 1.0 O4 N:0U95 5.0 20.5 1.0

W.Rypniewski, A.Kiliszek, L.Blaszczyk, M.Bejger. Racemic Compound of Rna Duplexes. To Be Published.