Zinc in PDB 6wu9: 50S Subunit of 70S Ribosome Enterococcus Faecalis Multibody Refinement

The binding sites of Zinc atom in the 50S Subunit of 70S Ribosome Enterococcus Faecalis Multibody Refinement (pdb code 6wu9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the 50S Subunit of 70S Ribosome Enterococcus Faecalis Multibody Refinement, PDB code: 6wu9:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the 50S Subunit of 70S Ribosome Enterococcus Faecalis Multibody Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 50S Subunit of 70S Ribosome Enterococcus Faecalis Multibody Refinement within 5.0Å range: probe atom residue distance (Å) B Occ 2:Zn101 b:31.1 occ:1.00 SG 2:CYS33 2.4 15.9 1.0 SG 2:CYS43 2.5 7.7 1.0 SG 2:CYS46 2.5 11.6 1.0 SG 2:CYS30 2.5 11.9 1.0 CB 2:CYS30 3.1 11.9 1.0 CB 2:CYS43 3.4 7.7 1.0 CB 2:CYS33 3.4 15.9 1.0 CB 2:CYS46 3.8 11.6 1.0 N 2:CYS33 3.8 15.9 1.0 OD1 2:ASN32 3.9 13.6 1.0 CA 2:CYS33 4.1 15.9 1.0 N 2:CYS46 4.3 11.6 1.0 C 2:CYS33 4.6 15.9 1.0 CA 2:CYS46 4.6 11.6 1.0 CA 2:CYS30 4.6 11.9 1.0 CB 2:ASN32 4.7 13.6 1.0 CG 2:ASN32 4.8 13.6 1.0 CA 2:CYS43 4.8 7.7 1.0 C 2:ASN32 4.8 13.6 1.0 CB 2:ALA45 4.8 10.6 1.0 N 2:GLY34 4.8 14.0 1.0

Zinc binding site 2 out of 3 in the 50S Subunit of 70S Ribosome Enterococcus Faecalis Multibody Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 50S Subunit of 70S Ribosome Enterococcus Faecalis Multibody Refinement within 5.0Å range: probe atom residue distance (Å) B Occ 3:Zn101 b:33.5 occ:1.00 OE2 3:GLU39 2.0 16.1 1.0 SG 3:CYS9 2.2 17.2 1.0 SG 3:CYS12 2.3 19.4 1.0 SG 3:CYS36 2.7 12.5 1.0 CB 3:CYS12 3.1 19.4 1.0 CB 3:CYS9 3.2 17.2 1.0 CD 3:GLU39 3.2 16.1 1.0 N 3:CYS12 3.3 19.4 1.0 CA 3:CYS12 3.7 19.4 1.0 OG 3:SER11 3.9 17.4 1.0 CB 3:CYS36 3.9 12.5 1.0 OE1 3:GLU39 4.0 16.1 1.0 CG 3:GLU39 4.2 16.1 1.0 C 3:CYS12 4.4 19.4 1.0 N 3:LYS13 4.4 20.0 1.0 C 3:SER11 4.4 17.4 1.0 N 3:SER11 4.6 17.4 1.0 CA 3:CYS9 4.6 17.2 1.0 CB 3:SER11 4.7 17.4 1.0 CG2 3:THR43 4.8 12.7 1.0 CA 3:SER11 4.8 17.4 1.0 ND2 3:ASN16 5.0 13.8 1.0

Zinc binding site 3 out of 3 in the 50S Subunit of 70S Ribosome Enterococcus Faecalis Multibody Refinement


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of 50S Subunit of 70S Ribosome Enterococcus Faecalis Multibody Refinement within 5.0Å range: probe atom residue distance (Å) B Occ 6:Zn101 b:28.1 occ:1.00 ND1 6:HIS33 2.0 9.5 1.0 SG 6:CYS11 2.2 16.2 1.0 SG 6:CYS27 2.4 10.8 1.0 CE1 6:HIS33 2.7 9.5 1.0 SG 6:CYS14 2.7 14.3 1.0 CB 6:CYS11 3.0 16.2 1.0 CG 6:HIS33 3.2 9.5 1.0 CB 6:CYS27 3.6 10.8 1.0 CB 6:HIS33 3.8 9.5 1.0 N 6:CYS11 3.8 16.2 1.0 CA 6:CYS11 3.9 16.2 1.0 NE2 6:HIS33 3.9 9.5 1.0 N 6:CYS14 4.1 14.3 1.0 CB 6:CYS14 4.2 14.3 1.0 CD2 6:HIS33 4.2 9.5 1.0 C 6:CYS11 4.4 16.2 1.0 CA 6:CYS14 4.5 14.3 1.0 C 6:MET10 4.6 12.5 1.0 CB 6:ASN30 4.7 10.0 1.0 N 6:HIS13 4.7 17.3 1.0 N 6:GLU12 4.8 20.1 1.0 C 6:HIS13 4.8 17.3 1.0 O 6:CYS11 4.9 16.2 1.0 O 6:MET10 5.0 12.5 1.0 CA 6:CYS27 5.0 10.8 1.0 CG 6:MET10 5.0 12.5 1.0

G.Jogl, R.Khayat. Cryo-Electron Microscopy Image Reconstruction of 70S Ribosome From Enterococcus Faecalis To Be Published.