Zinc in PDB 6vr7: Structure of A Pseudomurein Peptide Ligase Type C From Methanothermus Fervidus

The structure of Structure of A Pseudomurein Peptide Ligase Type C From Methanothermus Fervidus, PDB code: 6vr7 was solved by V.Carbone, L.R.Schofield, A.J.Sutherland-Smith, R.S.Ronimus, B.P.Subedi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.11 / 2.50
Space group	P 42 21 2
Cell size a, b, c (Å), α, β, γ (°)	97.802, 97.802, 138.351, 90, 90, 90
R / Rfree (%)	23.1 / 28.4

The structure of Structure of A Pseudomurein Peptide Ligase Type C From Methanothermus Fervidus also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the Structure of A Pseudomurein Peptide Ligase Type C From Methanothermus Fervidus (pdb code 6vr7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of A Pseudomurein Peptide Ligase Type C From Methanothermus Fervidus, PDB code: 6vr7:

Zinc binding site 1 out of 1 in the Structure of A Pseudomurein Peptide Ligase Type C From Methanothermus Fervidus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of A Pseudomurein Peptide Ligase Type C From Methanothermus Fervidus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn503 b:40.3 occ:1.00 SG A:CYS257 2.3 43.0 1.0 SG A:CYS260 2.4 56.0 1.0 SG A:CYS281 2.4 51.4 1.0 SG A:CYS279 2.5 50.4 1.0 CB A:CYS281 3.0 45.8 1.0 CB A:CYS257 3.0 41.0 1.0 CB A:CYS279 3.1 51.0 1.0 CB A:CYS260 3.1 43.0 1.0 N A:CYS260 3.8 40.9 1.0 CA A:CYS260 4.1 42.5 1.0 N A:CYS281 4.1 45.6 1.0 CA A:CYS281 4.2 46.6 1.0 CA A:CYS279 4.5 53.9 1.0 CA A:CYS257 4.5 39.5 1.0 CB A:PHE283 4.5 49.1 1.0 C A:CYS279 4.7 55.3 1.0 C A:CYS260 4.8 44.4 1.0 N A:GLY261 4.9 38.7 1.0 C A:PHE259 4.9 40.8 1.0 CB A:PHE259 4.9 36.8 1.0 C A:CYS281 5.0 52.5 1.0

V.Carbone, L.R.Schofield, A.J.Sutherland-Smith, R.S.Ronimus, B.P.Subedi. An Evolutionary History of Archaeal Pseudomurein and Bacterial Murein Cell Wall Biosynthesis Pathways To Be Published.