Zinc in PDB 6voq: Crystal Structure of Ygbl, A Putative Aldolase/Epimerase/Decarboxylase From Klebsiella Pneumoniae

Enzymatic activity of Crystal Structure of Ygbl, A Putative Aldolase/Epimerase/Decarboxylase From Klebsiella Pneumoniae

All present enzymatic activity of Crystal Structure of Ygbl, A Putative Aldolase/Epimerase/Decarboxylase From Klebsiella Pneumoniae:
4.1.2.17;

Protein crystallography data

The structure of Crystal Structure of Ygbl, A Putative Aldolase/Epimerase/Decarboxylase From Klebsiella Pneumoniae, PDB code: 6voq was solved by P.J.Stogios, E.Evdokimova, C.Mcchesney, R.Di Leo, A.Savchenko, A.Joachimiak, K.J.F.Satchell, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.58 / 2.49
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 76.436, 76.436, 181.682, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 21.1

Other elements in 6voq:

The structure of Crystal Structure of Ygbl, A Putative Aldolase/Epimerase/Decarboxylase From Klebsiella Pneumoniae also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Ygbl, A Putative Aldolase/Epimerase/Decarboxylase From Klebsiella Pneumoniae (pdb code 6voq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Ygbl, A Putative Aldolase/Epimerase/Decarboxylase From Klebsiella Pneumoniae, PDB code: 6voq:

Zinc binding site 1 out of 1 in 6voq

Go back to Zinc Binding Sites List in 6voq
Zinc binding site 1 out of 1 in the Crystal Structure of Ygbl, A Putative Aldolase/Epimerase/Decarboxylase From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Ygbl, A Putative Aldolase/Epimerase/Decarboxylase From Klebsiella Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:44.9
occ:1.00
NE2 A:HIS160 2.1 38.7 1.0
NE2 A:HIS95 2.2 37.9 1.0
NE2 A:HIS93 2.2 39.7 1.0
OE1 A:GLU74 2.3 55.2 1.0
OE2 A:GLU74 2.9 45.1 1.0
CD A:GLU74 2.9 46.2 1.0
CD2 A:HIS160 3.1 28.6 1.0
CE1 A:HIS95 3.1 30.1 1.0
CE1 A:HIS93 3.1 30.5 1.0
CE1 A:HIS160 3.2 32.2 1.0
CD2 A:HIS95 3.2 30.8 1.0
CD2 A:HIS93 3.2 33.4 1.0
O A:HOH430 3.6 56.4 1.0
CG A:HIS160 4.2 32.1 1.0
ND1 A:HIS160 4.2 35.0 1.0
ND1 A:HIS95 4.3 36.7 1.0
ND1 A:HIS93 4.3 35.6 1.0
CG A:HIS95 4.3 35.5 1.0
CG A:HIS93 4.3 34.7 1.0
CG A:GLU74 4.4 42.0 1.0
CZ A:PHE77 5.0 32.8 1.0

Reference:

P.J.Stogios, P.J.Stogios, E.Evdokimova, C.Mcchesney, R.Di Leo, A.Savchenko, A.Joachimiak, K.J.F.Satchell, Center For Structural Genomics Ofinfectious Diseases (Csgid). N/A N/A.
Page generated: Wed Dec 16 13:02:07 2020

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