Zinc in PDB 6ty2: Ct Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1

The structure of Ct Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1, PDB code: 6ty2 was solved by F.Vignols, F.Hoh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.37 / 1.98
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	38.081, 31.188, 41.98, 90, 101.1, 90
R / Rfree (%)	19.4 / 22.7

The binding sites of Zinc atom in the Ct Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1 (pdb code 6ty2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Ct Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1, PDB code: 6ty2:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Ct Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Ct Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:21.4 occ:1.00 NE2 A:HIS8 2.1 19.7 1.0 ND1 A:HIS44 2.2 19.3 1.0 SG A:CYS48 2.3 18.9 1.0 SG A:CYS39 2.3 18.5 1.0 CE1 A:HIS8 2.9 20.0 1.0 CG A:HIS44 3.1 18.5 1.0 CB A:CYS48 3.1 14.2 1.0 CD2 A:HIS8 3.2 17.4 1.0 CB A:CYS39 3.2 17.7 1.0 CB A:HIS44 3.2 18.1 1.0 CE1 A:HIS44 3.3 21.0 1.0 ND1 A:HIS8 4.1 17.9 1.0 CG2 A:ILE4 4.1 21.9 1.0 CG A:HIS8 4.2 21.4 1.0 CD2 A:HIS44 4.3 20.8 1.0 NE2 A:HIS44 4.3 20.0 1.0 CA A:CYS48 4.5 17.6 1.0 O A:HOH220 4.6 19.4 1.0 O A:SER35 4.6 19.7 1.0 CA A:CYS39 4.6 17.4 1.0 CA A:HIS44 4.7 20.1 1.0 CD1 A:ILE41 4.7 21.9 1.0 CD1 A:ILE4 4.9 29.7 1.0 CB A:ILE41 4.9 19.0 1.0 CA A:ARG36 5.0 18.8 1.0

Zinc binding site 2 out of 2 in the Ct Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Ct Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn101 b:22.3 occ:0.95 NE2 B:HIS8 2.0 24.0 1.0 SG B:CYS39 2.3 21.5 1.0 ND1 B:HIS44 2.3 26.1 1.0 SG B:CYS48 2.4 22.5 1.0 CE1 B:HIS8 2.8 19.5 1.0 CG B:HIS44 3.1 23.0 1.0 CD2 B:HIS8 3.2 18.0 1.0 CB B:CYS39 3.2 19.1 1.0 CB B:HIS44 3.2 20.9 1.0 CB B:CYS48 3.3 22.7 1.0 CE1 B:HIS44 3.4 24.4 1.0 ND1 B:HIS8 4.0 20.5 1.0 CG B:HIS8 4.2 22.4 1.0 CG2 B:ILE4 4.2 28.6 1.0 CD2 B:HIS44 4.4 24.8 1.0 CD1 B:ILE4 4.4 29.3 1.0 NE2 B:HIS44 4.4 32.8 1.0 O B:SER35 4.6 22.1 1.0 CA B:CYS39 4.6 22.4 1.0 O B:HOH205 4.7 24.9 1.0 CA B:CYS48 4.7 24.0 1.0 CA B:HIS44 4.7 22.9 1.0 CD1 B:ILE41 4.8 26.5 1.0 CB B:ILE41 5.0 26.0 1.0

F.Vignols, F.Hoh. Ct Part Crystal Structure of the Rymv-Encoded Viral Rna Silencing Suppressor P1 To Be Published.