Zinc in PDB 6ttc: Haddock Model of Ndm-1/Myricetin Complex

The binding sites of Zinc atom in the Haddock Model of Ndm-1/Myricetin Complex (pdb code 6ttc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Haddock Model of Ndm-1/Myricetin Complex, PDB code: 6ttc:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Haddock Model of Ndm-1/Myricetin Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Haddock Model of Ndm-1/Myricetin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:15.0 occ:1.00 O13 A:MYC303 1.5 15.0 1.0 OD2 A:ASP124 1.7 15.0 1.0 NE2 A:HIS250 1.9 15.0 1.0 HG A:CYS208 2.4 15.0 1.0 HO0 A:MYC303 2.4 15.0 1.0 C9 A:MYC303 2.6 15.0 1.0 CG A:ASP124 2.6 15.0 1.0 HO7 A:MYC303 2.6 15.0 1.0 CE1 A:HIS250 2.8 15.0 1.0 HE1 A:HIS250 2.9 15.0 1.0 HB2 A:ASP124 3.0 15.0 1.0 CD2 A:HIS250 3.1 15.0 1.0 SG A:CYS208 3.3 15.0 1.0 CB A:ASP124 3.3 15.0 1.0 O30 A:MYC303 3.3 15.0 1.0 HB3 A:CYS208 3.4 15.0 1.0 C10 A:MYC303 3.4 15.0 1.0 O27 A:MYC303 3.4 15.0 1.0 HD2 A:HIS250 3.5 15.0 1.0 HB3 A:ASP124 3.5 15.0 1.0 OD1 A:ASP124 3.5 15.0 1.0 C3 A:MYC303 3.6 15.0 1.0 CB A:CYS208 3.9 15.0 1.0 C2 A:MYC303 3.9 15.0 1.0 ND1 A:HIS250 4.0 15.0 1.0 ZN A:ZN302 4.1 15.0 1.0 CG A:HIS250 4.2 15.0 1.0 HB2 A:CYS208 4.3 15.0 1.0 HE1 A:HIS120 4.4 15.0 1.0 HG2 A:LYS125 4.5 15.0 1.0 NE2 A:HIS189 4.6 15.0 1.0 C11 A:MYC303 4.7 15.0 1.0 CA A:ASP124 4.7 15.0 1.0 HB2 A:SER249 4.7 15.0 1.0 C4 A:MYC303 4.8 15.0 1.0 HD1 A:HIS250 4.8 15.0 1.0 NE2 A:HIS120 4.8 15.0 1.0 HG A:SER75 4.9 15.0 1.0 O A:ASP124 5.0 15.0 1.0 HZ2 A:TRP93 5.0 15.0 1.0

Zinc binding site 2 out of 2 in the Haddock Model of Ndm-1/Myricetin Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Haddock Model of Ndm-1/Myricetin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:15.0 occ:1.00 OD1 A:ASP124 1.7 15.0 1.0 NE2 A:HIS120 2.0 15.0 1.0 ND1 A:HIS122 2.0 15.0 1.0 O30 A:MYC303 2.2 15.0 1.0 HB2 A:HIS122 2.3 15.0 1.0 HB3 A:HIS122 2.3 15.0 1.0 CB A:HIS122 2.5 15.0 1.0 HO0 A:MYC303 2.5 15.0 1.0 CG A:HIS122 2.6 15.0 1.0 CG A:ASP124 2.7 15.0 1.0 CD2 A:HIS120 2.7 15.0 1.0 HD2 A:HIS120 2.9 15.0 1.0 CE1 A:HIS120 3.1 15.0 1.0 OD2 A:ASP124 3.1 15.0 1.0 CE1 A:HIS122 3.2 15.0 1.0 NE2 A:HIS189 3.3 15.0 1.0 C2 A:MYC303 3.3 15.0 1.0 HE1 A:HIS120 3.5 15.0 1.0 HG A:CYS208 3.7 15.0 1.0 HE1 A:HIS122 3.8 15.0 1.0 H A:ASP124 3.8 15.0 1.0 HG3 A:LYS125 3.8 15.0 1.0 CD2 A:HIS122 3.9 15.0 1.0 C1 A:MYC303 3.9 15.0 1.0 CG A:HIS120 3.9 15.0 1.0 CA A:HIS122 4.0 15.0 1.0 CB A:ASP124 4.0 15.0 1.0 O13 A:MYC303 4.0 15.0 1.0 HD2 A:HIS189 4.0 15.0 1.0 ND1 A:HIS120 4.1 15.0 1.0 ZN A:ZN301 4.1 15.0 1.0 CD2 A:HIS189 4.1 15.0 1.0 HB3 A:ASP124 4.2 15.0 1.0 NE2 A:HIS122 4.2 15.0 1.0 HG2 A:LYS125 4.3 15.0 1.0 CE1 A:HIS189 4.3 15.0 1.0 C3 A:MYC303 4.4 15.0 1.0 CG A:LYS125 4.5 15.0 1.0 HE1 A:HIS189 4.5 15.0 1.0 N A:ASP124 4.6 15.0 1.0 HG23 A:THR190 4.6 15.0 1.0 HA A:HIS122 4.6 15.0 1.0 C A:HIS122 4.6 15.0 1.0 HB2 A:CYS208 4.7 15.0 1.0 N A:HIS122 4.7 15.0 1.0 C9 A:MYC303 4.7 15.0 1.0 CA A:ASP124 4.7 15.0 1.0 HD2 A:HIS122 4.8 15.0 1.0 HB2 A:ASP124 4.8 15.0 1.0 H A:LYS125 4.8 15.0 1.0 HB2 A:LYS125 4.8 15.0 1.0 SG A:CYS208 4.8 15.0 1.0 H A:GLN123 4.8 15.0 1.0 H A:HIS122 5.0 15.0 1.0 N A:GLN123 5.0 15.0 1.0 HD1 A:HIS120 5.0 15.0 1.0

A.Marra, G.Riviere, S.Oueslati, M.Gayral, J.B.Crechet, N.Nhiri, E.Jacquet, J.C.Cintrat, F.Giraud, C.Van Heijenoort, E.Lescop, S.Pethe, B.I.Iorga, T.Naas, E.Guittet, N.Morellet. N/A N/A.
ISSN: ISSN 1746-0921
PubMed: 21366414
DOI: 10.2217/FMB.10.171