Zinc in PDB 6smk: Crystal Structure of Catalytic Domain A109H Mutant of Prophage-Encoded M23 Protein Enpa From Enterococcus Faecalis.

The structure of Crystal Structure of Catalytic Domain A109H Mutant of Prophage-Encoded M23 Protein Enpa From Enterococcus Faecalis., PDB code: 6smk was solved by P.H.Malecki, P.Mitkowski, H.Czapinska, I.Sabala, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.25 / 3.00
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	136.469, 136.469, 325.040, 90.00, 90.00, 120.00
R / Rfree (%)	22.5 / 25.9

The binding sites of Zinc atom in the Crystal Structure of Catalytic Domain A109H Mutant of Prophage-Encoded M23 Protein Enpa From Enterococcus Faecalis. (pdb code 6smk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 5 binding sites of Zinc where determined in the Crystal Structure of Catalytic Domain A109H Mutant of Prophage-Encoded M23 Protein Enpa From Enterococcus Faecalis., PDB code: 6smk:
Jump to Zinc binding site number: 1; 2; 3; 4; 5;

Zinc binding site 1 out of 5 in the Crystal Structure of Catalytic Domain A109H Mutant of Prophage-Encoded M23 Protein Enpa From Enterococcus Faecalis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Catalytic Domain A109H Mutant of Prophage-Encoded M23 Protein Enpa From Enterococcus Faecalis. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:85.1 occ:1.00 NE2 A:HIS29 1.9 0.3 1.0 ND1 A:HIS111 2.0 99.7 1.0 OD1 A:ASP33 2.2 0.5 1.0 O A:HOH302 2.3 59.9 1.0 CE1 A:HIS29 2.6 86.3 1.0 CE1 A:HIS111 2.7 86.6 1.0 OD2 A:ASP33 2.8 97.7 1.0 CG A:ASP33 2.8 94.5 1.0 CD2 A:HIS29 3.1 91.6 1.0 CG A:HIS111 3.2 85.5 1.0 ND1 A:HIS29 3.7 90.3 1.0 CB A:HIS111 3.7 77.5 1.0 NE2 A:HIS111 3.9 88.4 1.0 CG A:HIS29 4.0 95.2 1.0 NE2 A:HIS78 4.1 67.9 1.0 CD2 A:HIS111 4.1 84.5 1.0 CB A:ASP33 4.3 90.0 1.0 O A:HOH313 4.4 69.9 1.0 CD2 A:HIS78 4.7 65.8 1.0 CA A:HIS111 4.7 67.8 1.0 CA A:ASP33 4.9 79.8 1.0 N A:ASP33 4.9 76.5 1.0

Zinc binding site 2 out of 5 in the Crystal Structure of Catalytic Domain A109H Mutant of Prophage-Encoded M23 Protein Enpa From Enterococcus Faecalis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Catalytic Domain A109H Mutant of Prophage-Encoded M23 Protein Enpa From Enterococcus Faecalis. within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:75.9 occ:1.00 NE2 B:HIS29 1.9 0.5 1.0 ND1 B:HIS111 2.0 0.7 1.0 OD1 B:ASP33 2.1 0.7 1.0 O B:HOH306 2.7 75.8 1.0 CE1 B:HIS111 2.7 88.2 1.0 OD2 B:ASP33 2.7 0.0 1.0 CG B:ASP33 2.8 0.9 1.0 CE1 B:HIS29 2.9 0.8 1.0 CD2 B:HIS29 3.0 98.4 1.0 CG B:HIS111 3.1 81.3 1.0 CB B:HIS111 3.6 75.8 1.0 NE2 B:HIS111 3.8 84.3 1.0 CD2 B:HIS111 4.0 70.6 1.0 ND1 B:HIS29 4.0 0.6 1.0 NE2 B:HIS78 4.0 80.2 1.0 CG B:HIS29 4.1 97.6 1.0 CB B:ASP33 4.3 92.8 1.0 O B:HOH307 4.4 88.8 1.0 CA B:HIS111 4.5 69.1 1.0 CD2 B:HIS78 4.5 82.0 1.0 CA B:ASP33 4.9 83.4 1.0

Zinc binding site 3 out of 5 in the Crystal Structure of Catalytic Domain A109H Mutant of Prophage-Encoded M23 Protein Enpa From Enterococcus Faecalis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Catalytic Domain A109H Mutant of Prophage-Encoded M23 Protein Enpa From Enterococcus Faecalis. within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn201 b:90.1 occ:1.00 NE2 D:HIS29 2.0 0.7 1.0 OD1 D:ASP33 2.1 0.4 1.0 ND1 D:HIS111 2.1 0.8 1.0 O D:HOH302 2.6 82.3 1.0 OD2 D:ASP33 2.6 0.1 1.0 CG D:ASP33 2.7 0.7 1.0 CE1 D:HIS111 2.8 0.0 1.0 CE1 D:HIS29 3.0 0.4 1.0 CD2 D:HIS29 3.1 0.8 1.0 CG D:HIS111 3.3 0.7 1.0 CB D:HIS111 3.8 95.5 1.0 NE2 D:HIS111 4.0 0.1 1.0 NE2 D:HIS78 4.1 92.7 1.0 ND1 D:HIS29 4.1 0.0 1.0 CB D:ASP33 4.1 0.0 1.0 CG D:HIS29 4.2 0.0 1.0 CD2 D:HIS111 4.2 97.1 1.0 CD2 D:HIS78 4.4 96.7 1.0 O D:HOH304 4.5 74.6 1.0 CA D:HIS111 4.6 85.0 1.0 NH2 D:ARG21 4.7 0.9 1.0 CA D:ASP33 4.8 99.2 1.0 N D:ASP33 4.8 89.0 1.0

Zinc binding site 4 out of 5 in the Crystal Structure of Catalytic Domain A109H Mutant of Prophage-Encoded M23 Protein Enpa From Enterococcus Faecalis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Catalytic Domain A109H Mutant of Prophage-Encoded M23 Protein Enpa From Enterococcus Faecalis. within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn201 b:87.4 occ:1.00 NE2 C:HIS29 2.0 99.3 1.0 ND1 C:HIS111 2.2 0.8 1.0 OD1 C:ASP33 2.2 0.3 1.0 O C:HOH303 2.3 84.3 1.0 OD2 C:ASP33 2.5 0.8 1.0 CG C:ASP33 2.7 0.8 1.0 CE1 C:HIS29 2.9 86.8 1.0 CD2 C:HIS29 3.0 92.8 1.0 CE1 C:HIS111 3.0 0.9 1.0 CG C:HIS111 3.2 99.8 1.0 CB C:HIS111 3.6 93.3 1.0 ND1 C:HIS29 4.0 92.6 1.0 CG C:HIS29 4.1 92.6 1.0 NE2 C:HIS111 4.1 93.8 1.0 CB C:ASP33 4.1 85.6 1.0 NE2 C:HIS78 4.2 84.5 1.0 CD2 C:HIS111 4.2 95.5 1.0 CA C:HIS111 4.5 82.7 1.0 CD2 C:HIS78 4.6 86.4 1.0 O C:HOH307 4.6 72.9 1.0 CA C:ASP33 4.8 80.1 1.0 N C:ASP33 4.9 94.5 1.0 NH2 C:ARG21 4.9 0.6 1.0 OG C:SER16 4.9 95.9 1.0

Zinc binding site 5 out of 5 in the Crystal Structure of Catalytic Domain A109H Mutant of Prophage-Encoded M23 Protein Enpa From Enterococcus Faecalis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Catalytic Domain A109H Mutant of Prophage-Encoded M23 Protein Enpa From Enterococcus Faecalis. within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn201 b:90.6 occ:1.00 NE2 E:HIS29 2.0 0.8 1.0 OD1 E:ASP33 2.1 0.2 1.0 ND1 E:HIS111 2.2 0.1 1.0 OD2 E:ASP33 2.4 0.1 1.0 O E:HOH302 2.5 79.1 1.0 CG E:ASP33 2.6 0.6 1.0 CE1 E:HIS29 2.9 0.8 1.0 CE1 E:HIS111 3.0 0.1 1.0 CD2 E:HIS29 3.1 0.2 1.0 CG E:HIS111 3.2 0.8 1.0 CB E:HIS111 3.6 86.2 1.0 ND1 E:HIS29 4.0 0.8 1.0 NE2 E:HIS111 4.1 96.7 1.0 CB E:ASP33 4.1 0.6 1.0 NE2 E:HIS78 4.1 87.4 1.0 CG E:HIS29 4.2 0.5 1.0 CD2 E:HIS111 4.2 96.5 1.0 CA E:HIS111 4.5 79.6 1.0 CD2 E:HIS78 4.7 87.2 1.0 CA E:ASP33 4.7 92.3 1.0 N E:ASP33 4.8 88.5 1.0 O E:HOH305 5.0 73.0 1.0

P.H.Malecki, P.Mitkowski, H.Czapinska, I.Sabala. Crystal Structure of Catalytic Domain A109H Mutant of Prophage-Encoded M23 Protein Enpa From Enterococcus Faecalis. To Be Published.