Zinc in PDB 6shk: High Resolution Structure of the Antimicrobial Peptide Dermcidin From Human

The structure of High Resolution Structure of the Antimicrobial Peptide Dermcidin From Human, PDB code: 6shk was solved by K.Zeth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.29 / 1.99
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	50.758, 50.758, 105.880, 90.00, 90.00, 120.00
R / Rfree (%)	28.1 / 27.4

The binding sites of Zinc atom in the High Resolution Structure of the Antimicrobial Peptide Dermcidin From Human (pdb code 6shk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the High Resolution Structure of the Antimicrobial Peptide Dermcidin From Human, PDB code: 6shk:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the High Resolution Structure of the Antimicrobial Peptide Dermcidin From Human


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of High Resolution Structure of the Antimicrobial Peptide Dermcidin From Human within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:66.3 occ:0.77 OE2 A:GLU5 2.0 0.6 1.0 OD2 A:ASP9 2.3 84.1 1.0 CD A:GLU5 2.5 0.5 1.0 OE1 A:GLU5 2.6 0.4 1.0 OD1 A:ASP9 2.9 73.0 1.0 CG A:ASP9 2.9 86.2 1.0 CG A:GLU5 4.0 0.6 1.0 O A:GLU5 4.3 66.7 1.0 CB A:ASP9 4.4 79.1 1.0 CB A:GLU5 4.5 93.7 1.0 C A:GLU5 4.9 75.4 1.0

Zinc binding site 2 out of 2 in the High Resolution Structure of the Antimicrobial Peptide Dermcidin From Human


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of High Resolution Structure of the Antimicrobial Peptide Dermcidin From Human within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn102 b:0.3 occ:1.00 OD2 A:ASP28 2.0 0.1 1.0 OD2 A:ASP24 2.6 0.5 1.0 CG A:ASP28 2.9 85.7 1.0 OD1 A:ASP28 3.1 59.5 1.0 CG A:ASP24 3.6 97.2 1.0 OD1 A:ASP24 3.7 0.2 1.0 CB A:ASP28 4.3 63.4 1.0 O A:ASP24 4.6 57.8 1.0 CB A:ASP24 5.0 72.7 1.0

K.Zeth, K.Zeth. N/A N/A.