Zinc in PDB 6rmr: Crystal Structure of Escherichia Coli Periplasmic Glucose-1- Phosphatase H18D Mutant

Enzymatic activity of Crystal Structure of Escherichia Coli Periplasmic Glucose-1- Phosphatase H18D Mutant

All present enzymatic activity of Crystal Structure of Escherichia Coli Periplasmic Glucose-1- Phosphatase H18D Mutant:
3.1.3.10;

Protein crystallography data

The structure of Crystal Structure of Escherichia Coli Periplasmic Glucose-1- Phosphatase H18D Mutant, PDB code: 6rmr was solved by P.Pfeiffer, G.Oberdorfer, B.Nidetzky, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.77 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 64.035, 101.651, 114.929, 90.00, 90.00, 90.00
R / Rfree (%) 22.5 / 26.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Escherichia Coli Periplasmic Glucose-1- Phosphatase H18D Mutant (pdb code 6rmr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Escherichia Coli Periplasmic Glucose-1- Phosphatase H18D Mutant, PDB code: 6rmr:

Zinc binding site 1 out of 1 in 6rmr

Go back to Zinc Binding Sites List in 6rmr
Zinc binding site 1 out of 1 in the Crystal Structure of Escherichia Coli Periplasmic Glucose-1- Phosphatase H18D Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Escherichia Coli Periplasmic Glucose-1- Phosphatase H18D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn409

b:89.2
occ:1.00
OD1 A:ASN387 2.0 68.5 1.0
OD1 A:ASP270 2.1 70.0 1.0
OD1 A:ASP383 2.6 70.7 1.0
OD2 A:ASP270 2.7 74.5 1.0
CG A:ASP270 2.7 68.1 1.0
CG A:ASN387 2.9 69.3 1.0
O A:HOH544 3.2 63.1 1.0
ND2 A:ASN387 3.3 70.8 1.0
CG A:ASP383 3.6 73.6 1.0
OG1 A:THR275 3.7 77.2 1.0
OD2 A:ASP383 3.9 79.0 1.0
O A:HOH553 3.9 66.1 1.0
CB A:ASP270 4.1 66.0 1.0
CB A:ASN387 4.3 68.7 1.0
CB A:VAL274 4.3 72.4 1.0
O A:ASP383 4.5 65.7 1.0
O A:ASP270 4.6 68.1 1.0
CA A:ASN387 4.7 69.6 1.0
N A:ASN387 4.7 67.9 1.0
CB A:ASP383 5.0 67.8 1.0
C A:ASP270 5.0 65.0 1.0
CA A:ASP270 5.0 62.6 1.0

Reference:

P.Pfeiffer, G.Oberdorfer, B.Nidetzky. Crystal Structure of Escherichia Coli Periplasmic Glucose-1-Phosphatase H18D Mutant To Be Published.
Page generated: Wed Dec 16 12:40:56 2020

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