Zinc in PDB 6pr5: Cryo-Em Structure of Hztransib Strand Transfer Complex (Stc)

The structure of Cryo-Em Structure of Hztransib Strand Transfer Complex (Stc) also contains other interesting chemical elements:

Magnesium

(Mg)

4 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of Hztransib Strand Transfer Complex (Stc) (pdb code 6pr5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Hztransib Strand Transfer Complex (Stc), PDB code: 6pr5:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Hztransib Strand Transfer Complex (Stc)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Hztransib Strand Transfer Complex (Stc) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn603 b:81.0 occ:1.00 NE2 A:HIS408 2.0 58.3 1.0 NE2 A:HIS413 2.0 58.9 1.0 SG A:CYS243 2.0 66.4 1.0 SG A:CYS240 2.2 66.9 1.0 CD2 A:HIS413 2.6 58.9 1.0 CE1 A:HIS408 2.9 58.3 1.0 CD2 A:HIS408 3.1 58.3 1.0 CB A:CYS240 3.1 66.9 1.0 CB A:CYS243 3.1 66.4 1.0 CE1 A:HIS413 3.3 58.9 1.0 N A:CYS243 3.8 66.4 1.0 CG A:HIS413 3.9 58.9 1.0 CA A:CYS243 4.1 66.4 1.0 ND1 A:HIS408 4.1 58.3 1.0 CG A:HIS408 4.2 58.3 1.0 ND1 A:HIS413 4.2 58.9 1.0 CG2 A:ILE256 4.4 76.9 1.0 CA A:CYS240 4.5 66.9 1.0 O A:CYS240 4.5 66.9 1.0 CB A:LEU242 4.6 63.4 1.0 CB A:ALA245 4.7 70.0 1.0 C A:LEU242 4.7 63.4 1.0 C A:CYS240 4.8 66.9 1.0 C A:CYS243 4.9 66.4 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Hztransib Strand Transfer Complex (Stc)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Hztransib Strand Transfer Complex (Stc) within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn603 b:88.3 occ:1.00 NE2 E:HIS408 2.0 63.3 1.0 NE2 E:HIS413 2.0 66.2 1.0 SG E:CYS243 2.1 75.7 1.0 CD2 E:HIS413 2.6 66.2 1.0 SG E:CYS240 2.7 75.8 1.0 CD2 E:HIS408 2.9 63.3 1.0 CB E:CYS243 3.1 75.7 1.0 CE1 E:HIS408 3.1 63.3 1.0 CB E:CYS240 3.2 75.8 1.0 CE1 E:HIS413 3.3 66.2 1.0 CG E:HIS413 3.9 66.2 1.0 N E:CYS243 3.9 75.7 1.0 CG E:HIS408 4.1 63.3 1.0 CA E:CYS243 4.1 75.7 1.0 ND1 E:HIS408 4.1 63.3 1.0 ND1 E:HIS413 4.2 66.2 1.0 CG2 E:ILE256 4.7 80.8 1.0 CA E:CYS240 4.8 75.8 1.0 CB E:LEU242 4.8 71.9 1.0 C E:LEU242 4.8 71.9 1.0

C.Liu, Y.Yang, D.G.Schatz. Structures of A Rag-Like Transposase During Cut-and-Paste Transposition. Nature V. 575 540 2019.
ISSN: ESSN 1476-4687
PubMed: 31723264
DOI: 10.1038/S41586-019-1753-7