Zinc in PDB 6oa9: CDC48-NPL4 Complex Processing Poly-Ubiquitinated Substrate in the Presence of Atp

All present enzymatic activity of CDC48-NPL4 Complex Processing Poly-Ubiquitinated Substrate in the Presence of Atp:
3.6.4.6;

The binding sites of Zinc atom in the CDC48-NPL4 Complex Processing Poly-Ubiquitinated Substrate in the Presence of Atp (pdb code 6oa9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the CDC48-NPL4 Complex Processing Poly-Ubiquitinated Substrate in the Presence of Atp, PDB code: 6oa9:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the CDC48-NPL4 Complex Processing Poly-Ubiquitinated Substrate in the Presence of Atp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of CDC48-NPL4 Complex Processing Poly-Ubiquitinated Substrate in the Presence of Atp within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn601 b:0.6 occ:1.00 NE2 G:HIS139 2.3 0.8 1.0 SG G:CYS145 2.7 0.8 1.0 CD2 G:HIS139 2.8 0.8 1.0 N G:CYS145 2.9 0.8 1.0 SG G:CYS137 3.0 0.6 1.0 SG G:CYS148 3.2 0.1 1.0 N G:CYS148 3.5 0.1 1.0 N G:TYR147 3.5 0.7 1.0 CE1 G:HIS139 3.6 0.8 1.0 CB G:CYS145 3.6 0.8 1.0 N G:GLU146 3.6 0.4 1.0 CA G:CYS145 3.7 0.8 1.0 CB G:CYS137 3.8 0.6 1.0 C G:MET144 3.9 0.3 1.0 CA G:MET144 4.0 0.3 1.0 CG G:HIS139 4.1 0.8 1.0 CA G:TYR147 4.1 0.7 1.0 CB G:TYR147 4.1 0.7 1.0 C G:CYS145 4.1 0.8 1.0 C G:TYR147 4.2 0.7 1.0 CB G:CYS148 4.2 0.1 1.0 CA G:CYS148 4.4 0.1 1.0 ND1 G:HIS139 4.4 0.8 1.0 C G:GLU146 4.4 0.4 1.0 CA G:CYS137 4.5 0.6 1.0 CD2 G:TYR147 4.6 0.7 1.0 CA G:GLU146 4.6 0.4 1.0 CB G:MET144 4.7 0.3 1.0 CG G:TYR147 4.8 0.7 1.0 C G:CYS148 5.0 0.1 1.0

Zinc binding site 2 out of 2 in the CDC48-NPL4 Complex Processing Poly-Ubiquitinated Substrate in the Presence of Atp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of CDC48-NPL4 Complex Processing Poly-Ubiquitinated Substrate in the Presence of Atp within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn602 b:0.1 occ:1.00 CE1 G:HIS208 2.7 1.0 1.0 SG G:CYS219 2.8 0.7 1.0 CB G:CYS219 2.9 0.7 1.0 NE2 G:HIS208 3.0 1.0 1.0 CB G:CYS204 3.1 0.4 1.0 O G:CYS204 3.1 0.4 1.0 SG G:CYS216 3.4 0.1 1.0 CG G:LYS218 3.4 0.0 1.0 N G:CYS219 3.6 0.7 1.0 CA G:CYS204 3.6 0.4 1.0 C G:CYS204 3.8 0.4 1.0 SG G:CYS204 3.8 0.4 1.0 CA G:CYS219 3.9 0.7 1.0 ND1 G:HIS208 3.9 1.0 1.0 CD G:LYS218 4.2 0.0 1.0 CD2 G:HIS208 4.3 1.0 1.0 C G:LYS218 4.3 0.0 1.0 N G:CYS216 4.6 0.1 1.0 CB G:LYS218 4.7 0.0 1.0 CB G:CYS216 4.7 0.1 1.0 O G:CYS216 4.7 0.1 1.0 CG G:HIS208 4.8 1.0 1.0 ND2 G:ASN206 4.8 0.9 1.0 N G:LYS218 4.8 0.0 1.0 CA G:LYS218 4.9 0.0 1.0 CB G:ASN206 4.9 0.9 1.0 C G:CYS216 5.0 0.1 1.0

E.C.Twomey, Z.Ji, T.E.Wales, N.O.Bodnar, S.B.Ficarro, J.A.Marto, J.R.Engen, T.A.Rapoport. Substrate Processing By the CDC48 Atpase Complex Is Initiated By Ubiquitin Unfolding. Science V. 365 2019.
ISSN: ESSN 1095-9203
PubMed: 31249135
DOI: 10.1126/SCIENCE.AAX1033