Zinc in PDB 6l3s: Crystal Structure of Metallo-Beta-Lactamase Imp-27 From Morganella Morganii

The structure of Crystal Structure of Metallo-Beta-Lactamase Imp-27 From Morganella Morganii, PDB code: 6l3s was solved by Y.Kato, A.Shimizu-Ibuka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.57 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	47.590, 71.250, 136.210, 90.00, 90.00, 90.00
R / Rfree (%)	17.8 / 20

The binding sites of Zinc atom in the Crystal Structure of Metallo-Beta-Lactamase Imp-27 From Morganella Morganii (pdb code 6l3s). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of Metallo-Beta-Lactamase Imp-27 From Morganella Morganii, PDB code: 6l3s:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of Metallo-Beta-Lactamase Imp-27 From Morganella Morganii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Metallo-Beta-Lactamase Imp-27 From Morganella Morganii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:12.3 occ:1.00 ND1 A:HIS97 2.0 13.0 1.0 NE2 A:HIS157 2.0 12.8 1.0 NE2 A:HIS95 2.0 9.9 1.0 CE1 A:HIS97 2.9 13.3 1.0 CD2 A:HIS95 2.9 10.2 1.0 CE1 A:HIS157 3.0 15.1 1.0 CD2 A:HIS157 3.0 12.5 1.0 CG A:HIS97 3.0 12.3 1.0 CE1 A:HIS95 3.1 10.5 1.0 CB A:HIS97 3.4 11.8 1.0 ZN A:ZN302 3.5 16.1 1.0 CB A:CYS176 3.8 12.0 1.0 O A:HOH457 4.0 20.6 1.0 OD1 A:ASP99 4.0 15.5 1.0 NE2 A:HIS97 4.1 12.2 1.0 ND1 A:HIS157 4.1 12.4 1.0 CG A:HIS95 4.1 9.7 1.0 CD2 A:HIS97 4.1 13.3 1.0 CG A:HIS157 4.1 13.4 1.0 SG A:CYS176 4.2 13.0 1.0 ND1 A:HIS95 4.2 9.9 1.0 O A:HOH552 4.3 28.7 1.0 OD2 A:ASP99 4.5 13.5 1.0 CG A:ASP99 4.7 13.2 1.0 CG2 A:THR158 4.7 12.3 1.0 CA A:HIS97 4.9 11.1 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of Metallo-Beta-Lactamase Imp-27 From Morganella Morganii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Metallo-Beta-Lactamase Imp-27 From Morganella Morganii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:16.1 occ:1.00 OD2 A:ASP99 2.0 13.5 1.0 NE2 A:HIS215 2.1 13.5 1.0 SG A:CYS176 2.3 13.0 1.0 CG A:ASP99 2.9 13.2 1.0 CE1 A:HIS215 3.0 14.4 1.0 CD2 A:HIS215 3.1 14.6 1.0 OD1 A:ASP99 3.2 15.5 1.0 CB A:CYS176 3.3 12.0 1.0 O A:HOH457 3.4 20.6 1.0 ZN A:ZN301 3.5 12.3 1.0 O A:HOH552 3.9 28.7 1.0 CE1 A:HIS95 4.0 10.5 1.0 CD A:LYS51 4.0 10.3 1.0 CE A:LYS51 4.1 10.5 1.0 NE2 A:HIS95 4.1 9.9 1.0 ND1 A:HIS215 4.1 14.6 1.0 CG A:HIS215 4.2 13.6 1.0 CB A:ASP99 4.3 11.9 1.0 NE2 A:HIS157 4.5 12.8 1.0 CA A:CYS176 4.6 12.0 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of Metallo-Beta-Lactamase Imp-27 From Morganella Morganii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Metallo-Beta-Lactamase Imp-27 From Morganella Morganii within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:17.0 occ:1.00 OD2 B:ASP99 2.0 14.1 1.0 NE2 B:HIS215 2.1 14.2 1.0 SG B:CYS176 2.3 15.2 1.0 CG B:ASP99 2.9 13.6 1.0 CE1 B:HIS215 2.9 16.2 1.0 CD2 B:HIS215 3.1 14.8 1.0 OD1 B:ASP99 3.1 13.5 1.0 CB B:CYS176 3.3 14.2 1.0 ZN B:ZN302 3.4 14.9 1.0 O B:HOH484 3.5 20.9 1.0 O B:HOH488 3.9 26.2 1.0 CE1 B:HIS95 4.0 12.9 1.0 NE2 B:HIS95 4.0 11.0 1.0 ND1 B:HIS215 4.1 16.2 1.0 CD B:LYS51 4.2 11.1 1.0 CG B:HIS215 4.2 15.7 1.0 CE B:LYS51 4.2 10.9 1.0 CB B:ASP99 4.2 11.8 1.0 NE2 B:HIS157 4.4 18.5 1.0 CA B:CYS176 4.5 14.2 1.0 CE1 B:HIS157 5.0 20.0 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of Metallo-Beta-Lactamase Imp-27 From Morganella Morganii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Metallo-Beta-Lactamase Imp-27 From Morganella Morganii within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn302 b:14.9 occ:1.00 NE2 B:HIS157 2.0 18.5 1.0 ND1 B:HIS97 2.0 14.5 1.0 NE2 B:HIS95 2.0 11.0 1.0 CD2 B:HIS95 2.9 12.3 1.0 CE1 B:HIS97 2.9 15.3 1.0 CE1 B:HIS157 3.0 20.0 1.0 CD2 B:HIS157 3.0 16.7 1.0 CG B:HIS97 3.0 13.8 1.0 CE1 B:HIS95 3.1 12.9 1.0 ZN B:ZN301 3.4 17.0 1.0 CB B:HIS97 3.4 13.1 1.0 CB B:CYS176 3.7 14.2 1.0 OD1 B:ASP99 3.9 13.5 1.0 O B:HOH484 4.0 20.9 1.0 ND1 B:HIS157 4.1 18.0 1.0 SG B:CYS176 4.1 15.2 1.0 NE2 B:HIS97 4.1 14.5 1.0 CG B:HIS95 4.1 11.3 1.0 CG B:HIS157 4.1 17.1 1.0 CD2 B:HIS97 4.1 14.3 1.0 ND1 B:HIS95 4.2 11.2 1.0 OD2 B:ASP99 4.5 14.1 1.0 CG B:ASP99 4.6 13.6 1.0 CG2 B:THR158 4.7 15.6 1.0 CA B:HIS97 4.9 13.0 1.0

Y.Kato, A.Shimizu-Ibuka. Crystal Structure of the Metallo-Beta-Lactamase Imp-27 To Be Published.