Atomistry » Zinc » PDB 6ksn-6l66 » 6kua
Atomistry »
  Zinc »
    PDB 6ksn-6l66 »
      6kua »

Zinc in PDB 6kua: Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus

Enzymatic activity of Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus

All present enzymatic activity of Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus:
3.5.1.19;

Protein crystallography data

The structure of Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus, PDB code: 6kua was solved by F.Shang, J.Lan, W.Liu, Y.Xu, Y.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.40 / 2.10
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 89.019, 89.019, 210.694, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 22.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus (pdb code 6kua). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus, PDB code: 6kua:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in 6kua

Go back to Zinc Binding Sites List in 6kua
Zinc binding site 1 out of 7 in the Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.8
occ:1.00
 NE2 A:HIS56 2.3 66.4 1.0
CD2 A:HIS56 3.0 61.3 1.0
OD2 A:ASP54 3.1 61.1 1.0
CG A:ASP54 3.4 58.3 1.0
CE1 A:HIS56 3.4 62.1 1.0
OD1 A:ASP54 3.7 57.7 1.0
CB A:ASP54 4.1 47.9 1.0
CG A:HIS56 4.2 64.8 1.0
ND1 A:HIS56 4.4 62.5 1.0
CZ A:PHE15 4.7 61.2 1.0

Zinc binding site 2 out of 7 in 6kua

Go back to Zinc Binding Sites List in 6kua
Zinc binding site 2 out of 7 in the Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn201

b:1.0
occ:1.00
 CE1 C:HIS56 2.1 63.6 1.0
NE2 C:HIS56 2.6 70.2 1.0
ND1 C:HIS56 3.2 61.6 1.0
CD2 C:HIS56 3.8 66.0 1.0
CG C:HIS56 4.1 64.7 1.0
OD2 C:ASP54 4.6 49.9 1.0
O C:HOH324 4.6 51.4 1.0
CG C:ASP54 4.6 48.9 1.0
OD1 C:ASP54 4.8 51.2 1.0
CZ C:PHE15 4.9 52.5 1.0
CE1 C:TYR107 5.0 25.9 1.0

Zinc binding site 3 out of 7 in 6kua

Go back to Zinc Binding Sites List in 6kua
Zinc binding site 3 out of 7 in the Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn201

b:99.6
occ:1.00
 NE2 D:HIS56 2.5 73.2 1.0
OD1 D:ASP54 3.0 51.3 1.0
CE1 D:HIS56 3.0 69.0 1.0
O C:HOH319 3.5 28.4 1.0
O D:THR105 3.6 31.5 1.0
CD2 D:HIS56 3.6 63.7 1.0
CG D:ASP54 3.7 51.8 1.0
OD2 D:ASP54 4.0 53.0 1.0
CA D:ARG106 4.2 24.0 1.0
C D:THR105 4.2 28.3 1.0
ND1 D:HIS56 4.2 69.3 1.0
C D:ARG106 4.2 25.5 1.0
N D:TYR107 4.4 25.4 1.0
CD1 D:TYR107 4.4 23.7 1.0
CE1 D:TYR107 4.5 26.6 1.0
CG D:HIS56 4.5 66.0 1.0
N D:ARG106 4.5 26.4 1.0
O D:ARG106 4.6 25.5 1.0
CB D:ASP54 4.7 43.3 1.0

Zinc binding site 4 out of 7 in 6kua

Go back to Zinc Binding Sites List in 6kua
Zinc binding site 4 out of 7 in the Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn201

b:0.1
occ:1.00
 NE2 E:HIS56 2.4 63.2 1.0
CE1 E:HIS56 3.0 65.3 1.0
CD2 E:HIS56 3.4 63.1 1.0
ND1 E:HIS56 4.0 67.6 1.0
CG E:HIS56 4.2 67.1 1.0
OD1 E:ASP54 4.6 47.0 1.0
CG E:ASP54 4.7 51.2 1.0
CE1 E:TYR107 4.7 21.4 1.0
OD2 E:ASP54 4.8 52.9 1.0
O F:HOH344 4.9 21.9 1.0

Zinc binding site 5 out of 7 in 6kua

Go back to Zinc Binding Sites List in 6kua
Zinc binding site 5 out of 7 in the Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn201

b:88.3
occ:1.00
 CE1 F:HIS56 2.8 67.8 1.0
NE2 F:HIS56 3.1 70.7 1.0
ND1 F:HIS56 3.2 64.3 1.0
O F:HOH365 3.2 46.5 1.0
CD2 F:HIS56 3.6 65.5 1.0
CG F:HIS56 3.6 62.5 1.0
CG F:ASP54 3.7 51.1 1.0
OD2 F:ASP54 3.9 51.9 1.0
CB F:ASP54 3.9 44.0 1.0
OD1 F:ASP54 4.0 47.9 1.0
CB F:HIS56 4.6 62.2 1.0
CZ F:PHE15 4.8 52.1 1.0

Zinc binding site 6 out of 7 in 6kua

Go back to Zinc Binding Sites List in 6kua
Zinc binding site 6 out of 7 in the Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn201

b:1.0
occ:1.00
 OD2 G:ASP54 2.8 57.0 1.0
CD2 G:HIS56 2.8 74.9 1.0
NE2 G:HIS56 3.4 77.7 1.0
CG G:HIS56 3.4 76.4 1.0
O G:THR105 3.6 32.6 1.0
N G:HIS56 3.8 69.3 1.0
C G:LEU55 3.8 64.9 1.0
CB G:LEU55 3.8 54.5 1.0
CA G:THR105 3.9 29.5 1.0
N G:LEU55 3.9 48.9 1.0
CG G:ASP54 4.0 55.6 1.0
CB G:HIS56 4.0 73.9 1.0
CA G:LEU55 4.0 55.7 1.0
C G:THR105 4.1 29.6 1.0
CE1 G:HIS56 4.2 78.0 1.0
ND1 G:HIS56 4.2 79.2 1.0
O G:LYS104 4.2 34.0 1.0
O G:LEU55 4.3 66.1 1.0
CB G:THR105 4.4 31.8 1.0
CA G:HIS56 4.5 72.8 1.0
OD1 G:ASP54 4.5 53.9 1.0
O G:HOH366 4.6 50.2 1.0
CG2 G:THR105 4.8 31.7 1.0
C G:ASP54 4.9 45.1 1.0
N G:THR105 5.0 28.4 1.0

Zinc binding site 7 out of 7 in 6kua

Go back to Zinc Binding Sites List in 6kua
Zinc binding site 7 out of 7 in the Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn201

b:0.2
occ:1.00
 NE2 H:HIS56 2.1 72.3 1.0
OD2 H:ASP54 2.8 66.0 1.0
CE1 H:HIS56 2.8 70.6 1.0
CD2 H:HIS56 3.1 74.1 1.0
CG H:ASP54 3.6 61.9 1.0
ND1 H:HIS56 3.9 72.2 1.0
OD1 H:ASP54 4.0 64.3 1.0
CG H:HIS56 4.1 73.6 1.0
CZ H:PHE15 4.7 51.5 1.0
CB H:ASP54 4.8 42.8 1.0

Reference:

F.Shang, J.Lan, L.Wang, Y.Xu, Y.Chen. Crystal Structure of the Nicotinamidase Sapnca From Staphylococcus Aureus To Be Published.
Page generated: Tue Oct 29 02:06:17 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy