Zinc in PDB 6ks1: Crystal Structure of the Human Adiponectin Receptor 2

The structure of Crystal Structure of the Human Adiponectin Receptor 2, PDB code: 6ks1 was solved by H.Tanabe, Y.Fujii, Y.Nakamura, T.Hosaka, M.Okada-Iwabu, M.Iwabu, T.Kimura-Someya, M.Shirouzu, T.Yamauchi, T.Kadowaki, S.Yokoyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.52 / 2.40
Space group	P 21 2 21
Cell size a, b, c (Å), α, β, γ (°)	74.580, 101.030, 108.630, 90.00, 90.00, 90.00
R / Rfree (%)	22.9 / 26.7

The binding sites of Zinc atom in the Crystal Structure of the Human Adiponectin Receptor 2 (pdb code 6ks1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Human Adiponectin Receptor 2, PDB code: 6ks1:

Zinc binding site 1 out of 1 in the Crystal Structure of the Human Adiponectin Receptor 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Human Adiponectin Receptor 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:74.8 occ:1.00 NE2 A:HIS352 2.0 62.6 1.0 O A:HOH501 2.2 48.6 1.0 NE2 A:HIS348 2.3 77.1 1.0 NE2 A:HIS202 2.4 84.7 1.0 O A:HOH522 2.6 49.8 1.0 CE1 A:HIS352 2.9 58.0 1.0 CD2 A:HIS352 3.1 59.1 1.0 CD2 A:HIS348 3.1 53.8 1.0 CD2 A:HIS202 3.3 63.0 1.0 CE1 A:HIS202 3.3 62.2 1.0 CE1 A:HIS348 3.4 53.4 1.0 OG A:SER198 4.0 78.4 1.0 ND1 A:HIS352 4.0 58.7 1.0 CG A:HIS352 4.1 58.3 1.0 OD2 A:ASP219 4.2 98.3 1.0 CG A:HIS348 4.3 52.7 1.0 OD1 A:ASP219 4.4 70.9 1.0 ND1 A:HIS348 4.4 64.3 1.0 ND1 A:HIS202 4.4 67.3 1.0 CG A:HIS202 4.4 70.8 1.0 CG A:ASP219 4.7 73.4 1.0 CB A:SER198 4.8 66.0 1.0 O2 A:OLA402 4.8 71.7 1.0

H.Tanabe, Y.Fujii, M.Okada-Iwabu, M.Iwabu, K.Kano, H.Kawana, M.Hato, Y.Nakamura, T.Terada, T.Kimura-Someya, M.Shirouzu, Y.Kawano, M.Yamamoto, J.Aoki, T.Yamauchi, T.Kadowaki, S.Yokoyama. Human Adiponectin Receptor ADIPOR1 Assumes Closed and Open Structures. Commun Biol V. 3 446 2020.
ISSN: ESSN 2399-3642
PubMed: 32796916
DOI: 10.1038/S42003-020-01160-4