Zinc in PDB 6k0a: Cryo-Em Structure of An Archaeal Ribonuclease P

All present enzymatic activity of Cryo-Em Structure of An Archaeal Ribonuclease P:
3.1.26.5;

The binding sites of Zinc atom in the Cryo-Em Structure of An Archaeal Ribonuclease P (pdb code 6k0a). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of An Archaeal Ribonuclease P, PDB code: 6k0a:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of An Archaeal Ribonuclease P


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of An Archaeal Ribonuclease P within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn201 b:0.7 occ:1.00 SG G:CYS66 2.5 1.0 1.0 SG G:CYS63 2.5 0.2 1.0 CB G:CYS92 2.6 0.3 1.0 SG G:CYS95 2.6 0.3 1.0 SG G:CYS92 2.6 0.3 1.0 CB G:CYS63 2.8 0.2 1.0 CB G:CYS66 3.8 1.0 1.0 CB G:CYS95 4.1 0.3 1.0 CA G:CYS92 4.1 0.3 1.0 N G:CYS66 4.3 1.0 1.0 CA G:CYS63 4.3 0.2 1.0 N G:CYS95 4.6 0.3 1.0 CA G:CYS66 4.6 1.0 1.0 N G:GLY67 4.8 0.2 1.0 N G:CYS92 4.8 0.3 1.0 CB G:ALA97 4.9 0.2 1.0 C G:CYS63 4.9 0.2 1.0 OG1 G:THR68 4.9 95.8 1.0 CA G:CYS95 4.9 0.3 1.0 N G:THR68 4.9 95.8 1.0 CD2 G:LEU70 5.0 0.5 1.0 N G:GLY96 5.0 0.6 1.0 C G:CYS92 5.0 0.3 1.0 N G:ALA97 5.0 0.2 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of An Archaeal Ribonuclease P


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of An Archaeal Ribonuclease P within 5.0Å range: probe atom residue distance (Å) B Occ H:Zn201 b:0.4 occ:1.00 SG H:CYS66 2.5 0.2 1.0 SG H:CYS63 2.5 0.8 1.0 CB H:CYS92 2.6 0.2 1.0 SG H:CYS95 2.6 0.4 1.0 SG H:CYS92 2.6 0.2 1.0 CB H:CYS63 2.7 0.8 1.0 CB H:CYS66 3.8 0.2 1.0 CB H:CYS95 4.1 0.4 1.0 CA H:CYS92 4.1 0.2 1.0 N H:CYS66 4.3 0.2 1.0 CA H:CYS63 4.3 0.8 1.0 N H:CYS95 4.6 0.4 1.0 CA H:CYS66 4.6 0.2 1.0 N H:GLY67 4.8 0.1 1.0 N H:CYS92 4.8 0.2 1.0 CB H:ALA97 4.9 0.7 1.0 C H:CYS63 4.9 0.8 1.0 OG1 H:THR68 4.9 99.1 1.0 CA H:CYS95 4.9 0.4 1.0 N H:THR68 4.9 99.1 1.0 CD2 H:LEU70 5.0 0.8 1.0 N H:GLY96 5.0 0.5 1.0 C H:CYS92 5.0 0.2 1.0 N H:ALA97 5.0 0.7 1.0

F.Wan, Q.Wang, J.Tan, M.Tan, J.Chen, S.Shi, P.Lan, J.Wu, M.Lei. Cryo-Electron Microscopy Structure of An Archaeal Ribonuclease P Holoenzyme. Nat Commun V. 10 2617 2019.
ISSN: ESSN 2041-1723
PubMed: 31197137
DOI: 10.1038/S41467-019-10496-3