Zinc in PDB 6jes: Apo Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii

All present enzymatic activity of Apo Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii:
3.5.1.88;

The structure of Apo Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii, PDB code: 6jes was solved by K.H.Jung, T.H.Ho, I.H.Lee, L.W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.99 / 1.75
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	40.131, 71.334, 111.317, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 22.6

The binding sites of Zinc atom in the Apo Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii (pdb code 6jes). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Apo Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii, PDB code: 6jes:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Apo Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Apo Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:26.7 occ:1.00 NE2 A:HIS145 2.1 24.6 1.0 NE2 A:HIS149 2.1 23.9 1.0 SG A:CYS103 2.2 26.5 1.0 O A:HOH308 2.4 25.1 1.0 CD2 A:HIS145 3.0 24.4 1.0 CB A:CYS103 3.1 29.4 1.0 CE1 A:HIS149 3.1 24.5 1.0 CE1 A:HIS145 3.1 25.4 1.0 CD2 A:HIS149 3.1 22.6 1.0 NE2 A:GLN55 3.5 20.3 1.0 O A:HOH341 3.5 25.6 1.0 CA A:CYS103 3.7 31.0 1.0 CD A:GLN55 4.1 21.9 1.0 N A:LEU104 4.1 30.7 1.0 CG A:HIS145 4.2 21.5 1.0 OE1 A:GLN55 4.2 20.5 1.0 ND1 A:HIS145 4.2 21.8 1.0 ND1 A:HIS149 4.2 24.4 1.0 CG A:HIS149 4.3 21.5 1.0 C A:CYS103 4.3 33.0 1.0 C2 A:GOL202 4.4 50.4 1.0 O A:HOH345 4.5 20.8 1.0 OE2 A:GLU146 4.6 20.8 1.0 O A:GLY102 4.7 35.5 1.0 O1 A:GOL202 4.8 50.6 1.0 C3 A:GOL202 4.8 50.7 1.0 C1 A:GOL202 4.8 57.0 1.0 OE1 A:GLU146 4.9 22.3 1.0 N A:CYS103 5.0 33.3 1.0

Zinc binding site 2 out of 2 in the Apo Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Apo Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:21.2 occ:1.00 NE2 B:HIS145 2.1 17.1 1.0 NE2 B:HIS149 2.1 17.1 1.0 SG B:CYS103 2.3 21.1 1.0 O B:HOH319 2.3 24.6 1.0 CD2 B:HIS145 2.9 20.0 1.0 CE1 B:HIS149 3.0 17.4 1.0 CD2 B:HIS149 3.1 17.7 1.0 CE1 B:HIS145 3.2 19.9 1.0 CB B:CYS103 3.3 20.0 1.0 O B:HOH336 3.4 19.5 1.0 NE2 B:GLN55 3.6 18.1 1.0 CA B:CYS103 3.8 21.7 1.0 CD B:GLN55 3.9 17.5 1.0 OE1 B:GLN55 4.0 17.9 1.0 CG B:HIS145 4.1 19.4 1.0 ND1 B:HIS149 4.2 18.2 1.0 ND1 B:HIS145 4.2 19.0 1.0 CG B:HIS149 4.2 18.5 1.0 OE2 B:GLU146 4.3 24.1 1.0 O B:HOH324 4.4 20.3 1.0 C2 B:GOL202 4.4 56.5 1.0 N B:LEU104 4.5 22.8 1.0 O B:GLY102 4.6 25.4 1.0 OE1 B:GLU146 4.6 20.8 1.0 C B:CYS103 4.6 23.4 1.0 C1 B:GOL202 4.8 55.6 1.0 CD B:GLU146 4.8 20.3 1.0 O1 B:GOL202 4.9 44.7 1.0 C3 B:GOL202 4.9 57.1 1.0

K.H.Jung, T.H.Ho, I.H.Lee, L.W.Kang. Apo Crystal Structure of Class I Type B Peptide Deformylase From Acinetobacter Baumannii To Be Published.