Zinc in PDB 6jde: Crystal Structure of A Dna Repair Protein

All present enzymatic activity of Crystal Structure of A Dna Repair Protein:
3.6.4.12;

The structure of Crystal Structure of A Dna Repair Protein, PDB code: 6jde was solved by X.X.Yan, Q.Tang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.95 / 2.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	80.515, 78.455, 110.587, 90.00, 98.50, 90.00
R / Rfree (%)	22.8 / 24

The binding sites of Zinc atom in the Crystal Structure of A Dna Repair Protein (pdb code 6jde). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Dna Repair Protein, PDB code: 6jde:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of A Dna Repair Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Dna Repair Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn601 b:18.5 occ:1.00 SG B:CYS411 2.3 18.8 1.0 SG B:CYS387 2.3 17.2 1.0 SG B:CYS425 2.4 21.8 1.0 SG B:CYS384 2.4 22.6 1.0 CB B:CYS411 3.0 17.1 1.0 CB B:CYS387 3.1 21.6 1.0 CB B:CYS425 3.1 20.1 1.0 CB B:CYS384 3.3 19.9 1.0 N B:CYS387 3.6 24.4 1.0 CA B:CYS387 3.9 22.1 1.0 CB B:PHE427 4.3 11.3 1.0 CB B:ALA386 4.4 14.1 1.0 CA B:CYS411 4.5 16.0 1.0 CA B:CYS425 4.6 19.6 1.0 C B:ALA386 4.7 21.3 1.0 C B:CYS387 4.7 21.8 1.0 CA B:CYS384 4.7 14.4 1.0 N B:GLY388 4.8 18.9 1.0 CB B:PHE389 4.9 21.2 1.0 CA B:ALA386 4.9 19.1 1.0 N B:PHE427 5.0 13.8 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of A Dna Repair Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Dna Repair Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn601 b:38.6 occ:1.00 SG A:CYS411 2.3 29.3 1.0 SG A:CYS425 2.3 28.9 1.0 SG A:CYS387 2.3 40.7 1.0 SG A:CYS384 2.5 36.1 1.0 CB A:CYS411 3.1 28.4 1.0 CB A:CYS425 3.3 34.0 1.0 CB A:CYS384 3.3 39.8 1.0 CB A:CYS387 3.5 31.5 1.0 N A:CYS387 3.8 37.3 1.0 CB A:PHE427 4.3 15.8 1.0 CA A:CYS387 4.3 39.3 1.0 CB A:ALA386 4.3 30.7 1.0 CA A:CYS411 4.5 32.4 1.0 CA A:CYS425 4.7 31.3 1.0 CA A:CYS384 4.8 30.0 1.0 C A:ALA386 4.8 32.2 1.0 CA A:ALA386 4.9 30.2 1.0 N A:ALA386 4.9 28.3 1.0 CB A:PHE389 5.0 37.9 1.0 N A:PHE427 5.0 21.7 1.0

X.Kuang, Q.Tang, Y.P.Liu, X.X.Yan, W.Xu. Crystal Structure of A Novel Atpase Radd From Escherichia Coli. Proteins V. 87 791 2019.
ISSN: ESSN 1097-0134
PubMed: 31035307
DOI: 10.1002/PROT.25704