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Zinc in PDB 6j92: Crystal Structure of Acetolactate Decarboxylase From Enterbacter Aerogenes

Enzymatic activity of Crystal Structure of Acetolactate Decarboxylase From Enterbacter Aerogenes

All present enzymatic activity of Crystal Structure of Acetolactate Decarboxylase From Enterbacter Aerogenes:
4.1.1.5;

Protein crystallography data

The structure of Crystal Structure of Acetolactate Decarboxylase From Enterbacter Aerogenes, PDB code: 6j92 was solved by L.Mingyang, X.Song, J.Fangling, F.Yanbin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.03 / 2.42
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 83.541, 83.541, 139.173, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 21.9

Other elements in 6j92:

The structure of Crystal Structure of Acetolactate Decarboxylase From Enterbacter Aerogenes also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Acetolactate Decarboxylase From Enterbacter Aerogenes (pdb code 6j92). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Acetolactate Decarboxylase From Enterbacter Aerogenes, PDB code: 6j92:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6j92

Go back to Zinc Binding Sites List in 6j92
Zinc binding site 1 out of 2 in the Crystal Structure of Acetolactate Decarboxylase From Enterbacter Aerogenes


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Acetolactate Decarboxylase From Enterbacter Aerogenes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn300

b:27.6
occ:1.00
O A:HOH409 1.9 32.1 1.0
NE2 A:HIS199 2.0 25.9 1.0
NE2 A:HIS201 2.1 28.0 1.0
ND1 A:HIS212 2.1 34.5 1.0
CL A:CL301 2.6 49.1 1.0
CE1 A:HIS212 2.9 29.3 1.0
CE1 A:HIS199 2.9 26.9 1.0
CD2 A:HIS201 3.0 28.5 1.0
CD2 A:HIS199 3.0 24.6 1.0
CE1 A:HIS201 3.1 29.8 1.0
CG A:HIS212 3.2 33.0 1.0
O A:HOH464 3.6 33.1 1.0
CB A:HIS212 3.7 30.8 1.0
OE2 A:GLU259 3.8 39.0 1.0
OE1 A:GLU70 3.9 32.4 1.0
NE2 A:HIS212 4.1 29.9 1.0
ND1 A:HIS199 4.1 26.9 1.0
CG A:HIS199 4.1 25.6 1.0
ND1 A:HIS201 4.2 29.2 1.0
CG A:HIS201 4.2 28.4 1.0
CD2 A:HIS212 4.2 31.7 1.0
CA A:HIS212 4.6 30.3 1.0
CD A:GLU259 4.9 40.4 1.0
CD A:GLU70 5.0 33.7 1.0

Zinc binding site 2 out of 2 in 6j92

Go back to Zinc Binding Sites List in 6j92
Zinc binding site 2 out of 2 in the Crystal Structure of Acetolactate Decarboxylase From Enterbacter Aerogenes


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Acetolactate Decarboxylase From Enterbacter Aerogenes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn300

b:29.1
occ:1.00
NE2 B:HIS199 2.0 29.1 1.0
ND1 B:HIS212 2.1 33.5 1.0
NE2 B:HIS201 2.1 30.7 1.0
CL B:CL301 2.2 48.0 1.0
CE1 B:HIS199 2.9 29.3 1.0
CE1 B:HIS212 3.0 34.0 1.0
CD2 B:HIS199 3.0 31.7 1.0
CD2 B:HIS201 3.1 30.0 1.0
CG B:HIS212 3.1 32.5 1.0
CE1 B:HIS201 3.1 29.4 1.0
CB B:HIS212 3.5 31.3 1.0
OE1 B:GLU70 3.7 46.5 1.0
O B:HOH417 3.8 42.8 1.0
ND1 B:HIS199 4.0 31.1 1.0
CG B:HIS199 4.1 31.6 1.0
NE2 B:HIS212 4.2 35.1 1.0
CG B:HIS201 4.2 33.0 1.0
CD2 B:HIS212 4.2 34.4 1.0
ND1 B:HIS201 4.2 30.4 1.0
O B:HOH438 4.3 49.2 1.0
CA B:HIS212 4.4 33.7 1.0
CD B:GLU70 4.7 45.1 1.0
NH2 B:ARG150 4.9 45.4 1.0

Reference:

J.Fangling, F.Yanbin, L.Mingyang. Crystal Structure of Acetolactate Decarboxylase From Enterbacter Aerogenes To Be Published.
Page generated: Wed Dec 16 12:03:48 2020

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