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Zinc in PDB 6j4g: Crystal Structure of the ATWRKY33 Domain

Protein crystallography data

The structure of Crystal Structure of the ATWRKY33 Domain, PDB code: 6j4g was solved by Y.P.Xu, H.Xu, B.Wang, X.D.Su, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.47 / 3.00
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 97.900, 97.900, 94.300, 90.00, 90.00, 120.00
R / Rfree (%) 20.4 / 24.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the ATWRKY33 Domain (pdb code 6j4g). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the ATWRKY33 Domain, PDB code: 6j4g:

Zinc binding site 1 out of 1 in 6j4g

Go back to Zinc Binding Sites List in 6j4g
Zinc binding site 1 out of 1 in the Crystal Structure of the ATWRKY33 Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the ATWRKY33 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:71.3
occ:1.00
NE2 B:HIS239 1.8 78.1 1.0
ND1 B:HIS237 2.0 72.8 1.0
SG B:CYS214 2.1 65.2 1.0
SG B:CYS209 2.2 61.8 1.0
CE1 B:HIS239 2.6 77.8 1.0
CE1 B:HIS237 2.9 73.3 1.0
CD2 B:HIS239 3.0 80.3 1.0
CG B:HIS237 3.0 75.4 1.0
CB B:CYS214 3.2 71.0 1.0
CB B:CYS209 3.3 68.0 1.0
CB B:HIS237 3.4 77.1 1.0
ND1 B:HIS239 3.8 80.6 1.0
CA B:HIS237 3.9 77.8 1.0
CG B:HIS239 4.0 82.9 1.0
NE2 B:HIS237 4.0 75.2 1.0
CD2 B:HIS237 4.1 75.2 1.0
CB B:PHE211 4.2 72.4 1.0
OG1 B:THR216 4.4 77.0 1.0
CB B:THR216 4.4 70.2 1.0
CA B:CYS214 4.6 68.9 1.0
CA B:CYS209 4.7 63.2 1.0
CD1 B:TYR187 4.7 80.9 1.0
N B:HIS237 4.8 74.7 1.0
CE1 B:TYR187 4.9 82.9 1.0
C B:HIS237 4.9 83.2 1.0
CG B:PHE211 4.9 78.9 1.0

Reference:

Y.P.Xu, H.Xu, B.Wang, X.D.Su. Crystal Structure of the N-Terminal Dna Binding Domain of ATWRKY33 To Be Published.
Page generated: Tue Oct 29 00:45:51 2024

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