Zinc in PDB 6ir0: Zinc Finger Domain of the Human Dtx Protein

All present enzymatic activity of Zinc Finger Domain of the Human Dtx Protein:
2.3.2.27;

The binding sites of Zinc atom in the Zinc Finger Domain of the Human Dtx Protein (pdb code 6ir0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Zinc Finger Domain of the Human Dtx Protein, PDB code: 6ir0:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Zinc Finger Domain of the Human Dtx Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Zinc Finger Domain of the Human Dtx Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 SG A:CYS14 2.3 0.0 1.0 SG A:CYS17 2.3 0.0 1.0 SG A:CYS55 2.3 0.0 1.0 ND1 A:HIS52 2.4 0.0 1.0 H A:CYS17 2.6 0.0 1.0 HB2 A:HIS52 2.6 0.0 1.0 H A:GLY26 3.0 0.0 1.0 HA A:SER25 3.0 0.0 1.0 HB A:ILE16 3.1 0.0 1.0 CG A:HIS52 3.2 0.0 1.0 CB A:CYS14 3.3 0.0 1.0 HB3 A:CYS14 3.3 0.0 1.0 HB3 A:CYS17 3.3 0.0 1.0 CB A:HIS52 3.4 0.0 1.0 HB2 A:CYS14 3.4 0.0 1.0 CB A:CYS17 3.4 0.0 1.0 CE1 A:HIS52 3.4 0.0 1.0 N A:CYS17 3.5 0.0 1.0 CB A:CYS55 3.5 0.0 1.0 HB2 A:CYS55 3.6 0.0 1.0 HB3 A:CYS55 3.7 0.0 1.0 HE1 A:HIS52 3.7 0.0 1.0 HB3 A:HIS52 3.8 0.0 1.0 N A:GLY26 3.9 0.0 1.0 H A:ILE16 4.0 0.0 1.0 HG13 A:ILE16 4.0 0.0 1.0 CA A:CYS17 4.0 0.0 1.0 H A:HIS52 4.1 0.0 1.0 CA A:SER25 4.1 0.0 1.0 CB A:ILE16 4.1 0.0 1.0 H A:GLU19 4.3 0.0 1.0 HG A:SER25 4.3 0.0 1.0 HB2 A:CYS17 4.3 0.0 1.0 H A:MET18 4.3 0.0 1.0 HB2 A:GLU19 4.4 0.0 1.0 CD2 A:HIS52 4.4 0.0 1.0 O A:ALA24 4.5 0.0 1.0 NE2 A:HIS52 4.5 0.0 1.0 HB2 A:SER25 4.5 0.0 1.0 C A:ILE16 4.5 0.0 1.0 C A:SER25 4.5 0.0 1.0 N A:ILE16 4.6 0.0 1.0 CA A:HIS52 4.6 0.0 1.0 CG1 A:ILE16 4.6 0.0 1.0 H A:TYR27 4.7 0.0 1.0 CA A:ILE16 4.7 0.0 1.0 H A:ILE15 4.7 0.0 1.0 N A:HIS52 4.7 0.0 1.0 HA3 A:GLY26 4.7 0.0 1.0 CA A:CYS14 4.7 0.0 1.0 C A:CYS17 4.8 0.0 1.0 CB A:SER25 4.8 0.0 1.0 N A:MET18 4.8 0.0 1.0 H A:CYS55 4.9 0.0 1.0 CA A:CYS55 4.9 0.0 1.0 HG3 A:GLU19 4.9 0.0 1.0 HA A:CYS17 4.9 0.0 1.0 CA A:GLY26 4.9 0.0 1.0 N A:SER25 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Zinc Finger Domain of the Human Dtx Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Zinc Finger Domain of the Human Dtx Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:0.0 occ:1.00 CE1 A:HIS49 2.3 0.0 1.0 SG A:CYS71 2.3 0.0 1.0 SG A:CYS74 2.3 0.0 1.0 ND1 A:HIS49 2.3 0.0 1.0 SG A:CYS47 2.4 0.0 1.0 HE1 A:HIS49 2.6 0.0 1.0 HB A:THR76 2.6 0.0 1.0 H A:CYS74 2.7 0.0 1.0 NE2 A:HIS49 2.9 0.0 1.0 HB3 A:SER73 2.9 0.0 1.0 CG A:HIS49 3.0 0.0 1.0 HB2 A:CYS47 3.1 0.0 1.0 CB A:CYS47 3.2 0.0 1.0 CD2 A:HIS49 3.3 0.0 1.0 HB3 A:CYS47 3.4 0.0 1.0 HE2 A:HIS49 3.5 0.0 1.0 HB3 A:CYS71 3.5 0.0 1.0 CB A:CYS71 3.5 0.0 1.0 CB A:CYS74 3.5 0.0 1.0 HB3 A:CYS74 3.5 0.0 1.0 N A:CYS74 3.6 0.0 1.0 CB A:THR76 3.6 0.0 1.0 HB2 A:HIS49 3.7 0.0 1.0 HE1 A:PHE51 3.7 0.0 1.0 HZ A:PHE51 3.7 0.0 1.0 HB2 A:CYS71 3.7 0.0 1.0 H A:THR76 3.8 0.0 1.0 CB A:HIS49 4.0 0.0 1.0 OG1 A:THR76 4.0 0.0 1.0 CB A:SER73 4.0 0.0 1.0 CA A:CYS74 4.0 0.0 1.0 HG21 A:THR76 4.1 0.0 1.0 HG23 A:THR76 4.1 0.0 1.0 HD2 A:HIS49 4.2 0.0 1.0 HG1 A:THR76 4.2 0.0 1.0 CG2 A:THR76 4.2 0.0 1.0 HB2 A:CYS74 4.4 0.0 1.0 HB2 A:SER73 4.5 0.0 1.0 CE1 A:PHE51 4.5 0.0 1.0 CZ A:PHE51 4.5 0.0 1.0 HB3 A:HIS49 4.5 0.0 1.0 N A:THR76 4.5 0.0 1.0 C A:CYS74 4.5 0.0 1.0 C A:SER73 4.6 0.0 1.0 OG A:SER73 4.6 0.0 1.0 CA A:THR76 4.7 0.0 1.0 CA A:CYS47 4.7 0.0 1.0 H A:SER73 4.7 0.0 1.0 CA A:SER73 4.8 0.0 1.0 CA A:CYS71 4.9 0.0 1.0 O A:CYS74 4.9 0.0 1.0 H A:CYS47 4.9 0.0 1.0

K.Miyamoto, K.Miyamoto. N/A N/A.