Zinc in PDB 6gc8: 50S Ribosomal Subunit Assembly Intermediate - 50S Rec*

The structure of 50S Ribosomal Subunit Assembly Intermediate - 50S Rec* also contains other interesting chemical elements:

Magnesium

(Mg)

5 atoms

The binding sites of Zinc atom in the 50S Ribosomal Subunit Assembly Intermediate - 50S Rec* (pdb code 6gc8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the 50S Ribosomal Subunit Assembly Intermediate - 50S Rec*, PDB code: 6gc8:

Zinc binding site 1 out of 1 in the 50S Ribosomal Subunit Assembly Intermediate - 50S Rec*


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 50S Ribosomal Subunit Assembly Intermediate - 50S Rec* within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn3001 b:0.0 occ:1.00 O5' A:A2478 2.2 4.3 1.0 C8 A:A2478 2.4 2.9 1.0 C5 A:U2479 2.5 0.2 1.0 C3' A:A2478 2.6 4.3 1.0 O3' A:U2477 2.8 6.5 1.0 C6 A:U2479 2.9 0.2 1.0 N9 A:A2478 2.9 2.9 1.0 N7 A:A2478 3.1 2.9 1.0 OP2 A:U2479 3.1 0.0 1.0 P A:A2478 3.1 4.3 1.0 C5' A:A2478 3.2 4.3 1.0 C4' A:A2478 3.2 4.3 1.0 O4' A:A2478 3.3 4.3 1.0 C2' A:A2478 3.4 4.3 1.0 C1' A:A2478 3.4 4.3 1.0 C4 A:U2479 3.6 0.2 1.0 O3' A:A2478 3.6 4.3 1.0 P A:U2479 3.8 0.0 1.0 C4 A:A2478 3.8 2.9 1.0 C5 A:A2478 3.9 2.9 1.0 O5' A:U2479 4.0 0.0 1.0 C3' A:U2477 4.0 6.5 1.0 OP1 A:A2478 4.0 4.3 1.0 O4 A:U2479 4.1 0.2 1.0 N1 A:U2479 4.1 0.2 1.0 OP2 A:A2478 4.1 4.3 1.0 C4' A:U2477 4.2 6.5 1.0 C5' A:U2477 4.4 6.5 1.0 N3 A:U2479 4.6 0.2 1.0 O4' A:U2479 4.6 0.0 1.0 O2' A:A2478 4.7 4.3 1.0 O2' A:U2477 4.9 6.5 1.0 C2 A:U2479 4.9 0.2 1.0 N3 A:A2478 4.9 2.9 1.0

R.Nikolay, T.Hilal, B.Qin, T.Mielke, J.Burger, J.Loerke, K.Textoris-Taube, K.H.Nierhaus, C.M.T.Spahn. Structural Visualization of the Formation and Activation of the 50S Ribosomal Subunit During in Vitro Reconstitution. Mol. Cell V. 70 881 2018.
ISSN: ISSN 1097-4164
PubMed: 29883607
DOI: 10.1016/J.MOLCEL.2018.05.003