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Zinc in PDB 6fp5: Crystal Structure of Zad-Domain of CG2712 Protein From D.Melanogaster

Protein crystallography data

The structure of Crystal Structure of Zad-Domain of CG2712 Protein From D.Melanogaster, PDB code: 6fp5 was solved by K.M.Boyko, A.Y.Nikolaeva, A.N.Bonchuk, G.S.Kachalova, P.G.Georgiev, V.O.Popov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 69.05 / 2.00
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 97.650, 97.650, 48.480, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 19.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Zad-Domain of CG2712 Protein From D.Melanogaster (pdb code 6fp5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Zad-Domain of CG2712 Protein From D.Melanogaster, PDB code: 6fp5:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6fp5

Go back to Zinc Binding Sites List in 6fp5
Zinc binding site 1 out of 2 in the Crystal Structure of Zad-Domain of CG2712 Protein From D.Melanogaster


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Zad-Domain of CG2712 Protein From D.Melanogaster within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:24.8
occ:1.00
SG A:CYS69 2.3 23.6 1.0
SG A:CYS14 2.3 22.7 1.0
SG A:CYS17 2.4 25.8 1.0
SG A:CYS66 2.4 24.3 1.0
CB A:CYS14 3.2 22.6 1.0
CB A:CYS69 3.2 20.0 1.0
CB A:CYS17 3.3 26.3 1.0
CB A:CYS66 3.5 21.9 1.0
N A:CYS17 3.7 24.4 1.0
N A:CYS66 3.9 19.7 1.0
CA A:CYS17 4.1 25.7 1.0
CA A:CYS66 4.2 21.0 1.0
N A:CYS69 4.2 21.7 1.0
O A:HOH346 4.3 36.2 1.0
CA A:CYS69 4.3 21.2 1.0
CG2 A:THR19 4.3 33.1 1.0
CB A:VAL16 4.6 21.2 1.0
CA A:CYS14 4.7 22.9 1.0
C A:VAL16 4.7 24.6 1.0
O A:CYS66 4.7 19.9 1.0
C A:CYS17 4.8 26.3 1.0
C A:CYS66 4.8 21.1 1.0
N A:HIS18 5.0 26.1 1.0

Zinc binding site 2 out of 2 in 6fp5

Go back to Zinc Binding Sites List in 6fp5
Zinc binding site 2 out of 2 in the Crystal Structure of Zad-Domain of CG2712 Protein From D.Melanogaster


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Zad-Domain of CG2712 Protein From D.Melanogaster within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:25.9
occ:1.00
SG B:CYS69 2.3 24.9 1.0
SG B:CYS66 2.3 25.5 1.0
SG B:CYS14 2.4 24.1 1.0
SG B:CYS17 2.4 26.1 1.0
CB B:CYS69 3.2 21.6 1.0
CB B:CYS14 3.2 25.2 1.0
CB B:CYS17 3.4 25.3 1.0
CB B:CYS66 3.5 26.1 1.0
N B:CYS17 3.7 24.7 1.0
N B:CYS66 3.9 22.7 1.0
CA B:CYS17 4.1 24.5 1.0
N B:CYS69 4.2 23.4 1.0
CA B:CYS66 4.2 24.5 1.0
CA B:CYS69 4.3 22.4 1.0
CG2 B:THR19 4.3 33.1 1.0
O B:HOH331 4.3 34.3 1.0
CB B:VAL16 4.6 22.6 1.0
CA B:CYS14 4.6 24.3 1.0
C B:VAL16 4.7 23.9 1.0
O B:HOH360 4.7 45.2 1.0
O B:CYS66 4.8 21.7 1.0
C B:CYS17 4.8 26.2 1.0
C B:CYS66 4.8 23.9 1.0
CA B:VAL16 4.9 22.3 1.0
N B:HIS18 4.9 26.0 1.0
N B:VAL16 5.0 23.1 1.0

Reference:

K.M.Boyko, A.Y.Nikolaeva, A.N.Bonchuk, G.S.Kachalova, P.G.Georgiev, V.O.Popov. Crystal Structure of Zad-Domain of CG2712 Protein From D.Melanogaster To Be Published.
Page generated: Wed Dec 16 11:49:00 2020

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