Zinc in PDB 6fai: Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit

All present enzymatic activity of Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit:
2.7.11.1;

The structure of Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit also contains other interesting chemical elements:

Magnesium

(Mg)

46 atoms

The binding sites of Zinc atom in the Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit (pdb code 6fai). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit, PDB code: 6fai:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ b:Zn101 b:0.0 occ:1.00 SG b:CYS40 2.2 0.4 1.0 SG b:CYS59 2.3 0.1 1.0 SG b:CYS56 2.4 0.3 1.0 SG b:CYS37 2.5 0.8 1.0 CB b:CYS40 3.0 0.2 1.0 CB b:CYS56 3.0 0.8 1.0 CB b:CYS59 3.8 0.9 1.0 OG b:SER58 4.3 1.0 1.0 CB b:CYS37 4.3 0.4 1.0 CA b:CYS40 4.4 0.6 1.0 N b:CYS59 4.4 0.8 1.0 CA b:CYS56 4.5 0.0 1.0 O b:GLY39 4.6 0.8 1.0 CA b:CYS59 4.7 0.9 1.0 N b:CYS40 4.7 0.9 1.0 C b:GLY39 4.8 0.3 1.0 O b:CYS59 4.9 0.6 1.0 O b:CYS37 4.9 0.7 1.0

Zinc binding site 2 out of 2 in the Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ d:Zn101 b:0.5 occ:1.00 SG d:CYS24 2.3 0.8 1.0 SG d:CYS39 2.4 0.4 1.0 SG d:CYS42 2.4 1.0 1.0 SG d:CYS21 2.5 0.6 1.0 CB d:CYS42 3.4 0.2 1.0 CB d:CYS24 3.5 0.1 1.0 CB d:CYS21 3.6 0.6 1.0 CB d:CYS39 3.7 0.6 1.0 N d:CYS24 4.0 0.8 1.0 CA d:CYS24 4.3 0.7 1.0 N d:CYS39 4.3 0.0 1.0 N d:CYS42 4.3 0.4 1.0 CB d:VAL23 4.4 0.1 1.0 CB d:SER26 4.4 0.6 1.0 CA d:CYS42 4.5 0.5 1.0 CA d:CYS39 4.5 0.9 1.0 O d:CYS39 4.8 0.2 1.0 C d:VAL23 4.9 0.9 1.0 C d:CYS24 4.9 0.5 1.0 C d:CYS39 4.9 0.8 1.0 CA d:CYS21 5.0 0.9 1.0 O d:CYS21 5.0 0.1 1.0

A.Scaiola, C.Pena, M.Weisser, D.Bohringer, M.Leibundgut, P.Klingauf-Nerurkar, S.Gerhardy, V.G.Panse, N.Ban. Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit. Embo J. V. 37 2018.
ISSN: ESSN 1460-2075
PubMed: 29459436
DOI: 10.15252/EMBJ.201798499