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Zinc in PDB 6f3k: Combined Solid-State uc(Nmr), Solution-State uc(Nmr) and Em Data For Structure Determination of the Tetrahedral Aminopeptidase TET2 From P. Horikoshii

Zinc Binding Sites:

The binding sites of Zinc atom in the Combined Solid-State uc(Nmr), Solution-State uc(Nmr) and Em Data For Structure Determination of the Tetrahedral Aminopeptidase TET2 From P. Horikoshii (pdb code 6f3k). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Combined Solid-State uc(Nmr), Solution-State uc(Nmr) and Em Data For Structure Determination of the Tetrahedral Aminopeptidase TET2 From P. Horikoshii, PDB code: 6f3k:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6f3k

Go back to Zinc Binding Sites List in 6f3k
Zinc binding site 1 out of 2 in the Combined Solid-State uc(Nmr), Solution-State uc(Nmr) and Em Data For Structure Determination of the Tetrahedral Aminopeptidase TET2 From P. Horikoshii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Combined Solid-State uc(Nmr), Solution-State uc(Nmr) and Em Data For Structure Determination of the Tetrahedral Aminopeptidase TET2 From P. Horikoshii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:0.0
occ:0.00
HE1 A:HIS68 1.6 0.0 0.0
CE1 A:HIS68 2.0 0.0 0.0
NE2 A:HIS68 2.3 0.0 0.0
OD2 A:ASP235 2.4 0.0 0.0
OD1 A:ASP235 2.5 0.0 0.0
OD1 A:ASP182 2.5 0.0 0.0
CG A:ASP235 2.7 0.0 0.0
ND1 A:HIS68 3.1 0.0 0.0
H A:VAL236 3.3 0.0 0.0
CG A:ASP182 3.4 0.0 0.0
CD2 A:HIS68 3.4 0.0 0.0
OD2 A:ASP182 3.6 0.0 0.0
HG23 A:VAL236 3.7 0.0 0.0
CG A:HIS68 3.8 0.0 0.0
HA A:ASP235 3.8 0.0 0.0
OE1 A:GLU213 3.9 0.0 0.0
ZN A:ZN1002 4.0 0.0 0.0
CB A:ASP235 4.1 0.0 0.0
H A:ASP183 4.2 0.0 0.0
N A:VAL236 4.2 0.0 0.0
HD2 A:HIS68 4.2 0.0 0.0
CA A:ASP235 4.4 0.0 0.0
HG22 A:VAL236 4.4 0.0 0.0
HH12 A:ARG320 4.6 0.0 0.0
CG2 A:VAL236 4.6 0.0 0.0
HB3 A:ASP235 4.6 0.0 0.0
O A:VAL236 4.6 0.0 0.0
HA A:ASP182 4.6 0.0 0.0
HH11 A:ARG320 4.8 0.0 0.0
CB A:ASP182 4.8 0.0 0.0
HB2 A:ASP235 4.8 0.0 0.0
C A:ASP235 4.8 0.0 0.0
CD A:GLU213 4.9 0.0 0.0
OE2 A:GLU213 4.9 0.0 0.0

Zinc binding site 2 out of 2 in 6f3k

Go back to Zinc Binding Sites List in 6f3k
Zinc binding site 2 out of 2 in the Combined Solid-State uc(Nmr), Solution-State uc(Nmr) and Em Data For Structure Determination of the Tetrahedral Aminopeptidase TET2 From P. Horikoshii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Combined Solid-State uc(Nmr), Solution-State uc(Nmr) and Em Data For Structure Determination of the Tetrahedral Aminopeptidase TET2 From P. Horikoshii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1002

b:0.0
occ:0.00
OE2 A:GLU213 1.9 0.0 0.0
NE2 A:HIS323 2.2 0.0 0.0
CD A:GLU213 2.3 0.0 0.0
OD2 A:ASP182 2.4 0.0 0.0
OE1 A:GLU213 2.4 0.0 0.0
HH12 A:ARG320 2.9 0.0 0.0
CD2 A:HIS323 3.2 0.0 0.0
CE1 A:HIS323 3.3 0.0 0.0
HE1 A:HIS68 3.4 0.0 0.0
HD2 A:HIS323 3.4 0.0 0.0
HE1 A:HIS323 3.5 0.0 0.0
CG A:ASP182 3.6 0.0 0.0
CG A:GLU213 3.6 0.0 0.0
HH22 A:ARG320 3.7 0.0 0.0
HG2 A:GLU213 3.7 0.0 0.0
NH1 A:ARG320 3.8 0.0 0.0
ZN A:ZN1001 4.0 0.0 0.0
OD1 A:ASP182 4.1 0.0 0.0
HB2 A:GLU213 4.2 0.0 0.0
HG3 A:GLU213 4.3 0.0 0.0
CG A:HIS323 4.3 0.0 0.0
ND1 A:HIS323 4.4 0.0 0.0
CE1 A:HIS68 4.4 0.0 0.0
HH11 A:ARG320 4.4 0.0 0.0
NH2 A:ARG320 4.5 0.0 0.0
CB A:GLU213 4.5 0.0 0.0
CZ A:ARG320 4.6 0.0 0.0
HB A:ILE72 4.7 0.0 0.0
CB A:ASP182 4.8 0.0 0.0
HD13 A:ILE72 4.8 0.0 0.0
HB3 A:ASP182 4.9 0.0 0.0
HB2 A:ASP182 4.9 0.0 0.0
HA3 A:GLY92 5.0 0.0 0.0
OD1 A:ASP235 5.0 0.0 0.0
O A:GLN71 5.0 0.0 0.0

Reference:

D.F.Gauto, L.F.Estrozi, C.D.Schwieters, G.Effantin, P.Macek, R.Sounier, A.C.Sivertsen, E.Schmidt, R.Kerfah, G.Mas, J.P.Colletier, P.Guntert, A.Favier, G.Schoehn, P.Schanda, J.Boisbouvier. Integrated uc(Nmr) and Cryo-Em Atomic-Resolution Structure Determination of A Half-Megadalton Enzyme Complex. Nat Commun V. 10 2697 2019.
ISSN: ESSN 2041-1723
PubMed: 31217444
DOI: 10.1038/S41467-019-10490-9
Page generated: Wed Dec 16 11:45:52 2020

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