Zinc in PDB 6edt: Mycobacterium Tuberculosis Rnap Open Promoter Complex with Rbpa/Card and AP3 Promoter

Enzymatic activity of Mycobacterium Tuberculosis Rnap Open Promoter Complex with Rbpa/Card and AP3 Promoter

All present enzymatic activity of Mycobacterium Tuberculosis Rnap Open Promoter Complex with Rbpa/Card and AP3 Promoter:
2.7.7.6;

Other elements in 6edt:

The structure of Mycobacterium Tuberculosis Rnap Open Promoter Complex with Rbpa/Card and AP3 Promoter also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Mycobacterium Tuberculosis Rnap Open Promoter Complex with Rbpa/Card and AP3 Promoter (pdb code 6edt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Mycobacterium Tuberculosis Rnap Open Promoter Complex with Rbpa/Card and AP3 Promoter, PDB code: 6edt:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6edt

Go back to Zinc Binding Sites List in 6edt
Zinc binding site 1 out of 2 in the Mycobacterium Tuberculosis Rnap Open Promoter Complex with Rbpa/Card and AP3 Promoter


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Mycobacterium Tuberculosis Rnap Open Promoter Complex with Rbpa/Card and AP3 Promoter within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn2000

b:0.4
occ:1.00
SG D:CYS968 2.4 0.2 1.0
SG D:CYS891 2.4 0.7 1.0
SG D:CYS978 2.4 94.0 1.0
CB D:CYS968 2.5 0.2 1.0
CA D:CYS968 2.6 0.2 1.0
CB D:CYS891 2.7 0.7 1.0
SG D:CYS975 2.9 90.1 1.0
C D:CYS968 3.4 0.2 1.0
CB D:CYS978 3.4 94.0 1.0
N D:ALA969 3.4 97.2 1.0
N D:CYS968 3.8 0.2 1.0
CB D:CYS975 4.0 90.1 1.0
CA D:CYS891 4.1 0.7 1.0
O D:THR967 4.3 93.8 1.0
N D:CYS891 4.3 0.7 1.0
O D:CYS968 4.5 0.2 1.0
N D:CYS975 4.5 90.1 1.0
C D:THR967 4.5 93.8 1.0
CG2 D:THR893 4.6 99.5 1.0
CA D:CYS978 4.7 94.0 1.0
N D:THR970 4.7 95.0 1.0
N D:CYS978 4.8 94.0 1.0
CA D:ALA969 4.8 97.2 1.0
CA D:CYS975 4.9 90.1 1.0
CG2 D:THR970 4.9 95.0 1.0

Zinc binding site 2 out of 2 in 6edt

Go back to Zinc Binding Sites List in 6edt
Zinc binding site 2 out of 2 in the Mycobacterium Tuberculosis Rnap Open Promoter Complex with Rbpa/Card and AP3 Promoter


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Mycobacterium Tuberculosis Rnap Open Promoter Complex with Rbpa/Card and AP3 Promoter within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn2001

b:1.0
occ:1.00
N D:CYS62 2.2 0.4 1.0
SG D:CYS62 2.4 0.4 1.0
SG D:CYS78 2.4 0.5 1.0
SG D:CYS60 2.5 0.4 1.0
CB D:CYS78 2.7 0.5 1.0
CB D:CYS62 2.9 0.4 1.0
CA D:CYS62 3.0 0.4 1.0
N D:TYR61 3.1 0.0 1.0
CB D:CYS60 3.3 0.4 1.0
C D:TYR61 3.3 0.0 1.0
SG D:CYS75 3.5 0.2 1.0
N D:GLY63 3.6 0.8 1.0
C D:CYS62 3.6 0.4 1.0
CA D:TYR61 3.6 0.0 1.0
C D:CYS60 3.8 0.4 1.0
CA D:CYS78 4.0 0.5 1.0
N D:CYS78 4.1 0.5 1.0
CB D:CYS75 4.1 0.2 1.0
CB D:TYR61 4.1 0.0 1.0
CA D:CYS60 4.1 0.4 1.0
O D:TYR61 4.4 0.0 1.0
N D:LYS64 4.5 1.0 1.0
O D:CYS60 4.7 0.4 1.0
O D:CYS62 4.7 0.4 1.0
CA D:GLY63 4.8 0.8 1.0
C D:CYS78 4.9 0.5 1.0

Reference:

H.Boyaci, J.Chen, R.Jansen, S.A.Darst, E.A.Campbell. Structures of An Rna Polymerase Promoter Melting Intermediate Elucidate Dna Unwinding. Nature V. 565 382 2019.
ISSN: ESSN 1476-4687
PubMed: 30626968
DOI: 10.1038/S41586-018-0840-5
Page generated: Wed Dec 16 11:42:29 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy