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Zinc in PDB 6dui: Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with PT801

Enzymatic activity of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with PT801

All present enzymatic activity of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with PT801:
3.5.1.108;

Protein crystallography data

The structure of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with PT801, PDB code: 6dui was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.59 / 1.55
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 35.710, 48.000, 48.130, 111.32, 108.56, 98.83
R / Rfree (%) 15 / 18.8

Other elements in 6dui:

The structure of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with PT801 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with PT801 (pdb code 6dui). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with PT801, PDB code: 6dui:

Zinc binding site 1 out of 1 in 6dui

Go back to Zinc Binding Sites List in 6dui
Zinc binding site 1 out of 1 in the Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with PT801


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with PT801 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn403

b:9.8
occ:1.00
 NE2 A:HIS237 2.1 8.6 1.0
OD2 A:ASP241 2.1 10.4 1.0
O27 A:HAY401 2.1 10.3 0.7
NE2 A:HIS78 2.1 11.2 1.0
O29 A:HAY401 2.1 11.2 0.7
O27 A:J1M402 2.2 11.4 0.3
O29 A:J1M402 2.3 8.2 0.3
OD1 A:ASP241 2.7 10.7 1.0
CG A:ASP241 2.7 8.2 1.0
C26 A:J1M402 2.8 10.4 0.3
C26 A:HAY401 2.8 6.8 0.7
N28 A:J1M402 2.9 10.0 0.3
N28 A:HAY401 2.9 9.3 0.7
CE1 A:HIS237 3.0 8.8 1.0
CD2 A:HIS237 3.0 9.9 1.0
CE1 A:HIS78 3.1 18.1 1.0
CD2 A:HIS78 3.1 8.2 1.0
OG1 A:THR190 3.9 9.8 1.0
ND1 A:HIS237 4.1 9.2 1.0
CG A:HIS237 4.2 9.7 1.0
C02 A:J1M402 4.2 10.2 0.3
ND1 A:HIS78 4.2 17.5 1.0
CB A:THR190 4.2 7.3 1.0
CG A:GLU77 4.2 11.1 1.0
CB A:ASP241 4.2 7.5 1.0
CG A:HIS78 4.2 11.5 1.0
C02 A:HAY401 4.3 10.3 0.7
OE2 A:GLU77 4.4 15.1 1.0
C01 A:J1M402 4.5 13.3 0.3
O32 A:HAY401 4.7 13.6 0.7
C31 A:HAY401 4.8 10.8 0.7
CE1 A:HIS264 4.8 12.8 1.0
CA A:THR190 4.8 9.8 1.0
NE2 A:HIS264 4.8 12.3 1.0
CD A:GLU77 4.8 12.8 1.0
CA A:ASP241 4.9 6.5 1.0
O A:HIS237 4.9 10.0 1.0
S30 A:HAY401 4.9 12.6 0.7

Reference:

J.N.Phan, S.L.Delker, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with PT801 To Be Published.
Page generated: Mon Oct 28 19:47:21 2024

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