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Zinc in PDB 6dnw: Sequence Requirements of the Listeria Innocua Prophage Attp Site

Protein crystallography data

The structure of Sequence Requirements of the Listeria Innocua Prophage Attp Site, PDB code: 6dnw was solved by H.Li, R.Sharp, K.Rutherford, K.Gupta, G.D.Van Duyne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.97 / 2.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.291, 57.112, 167.883, 90.00, 90.00, 90.00
R / Rfree (%) 21.9 / 25.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Sequence Requirements of the Listeria Innocua Prophage Attp Site (pdb code 6dnw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Sequence Requirements of the Listeria Innocua Prophage Attp Site, PDB code: 6dnw:

Zinc binding site 1 out of 1 in 6dnw

Go back to Zinc Binding Sites List in 6dnw
Zinc binding site 1 out of 1 in the Sequence Requirements of the Listeria Innocua Prophage Attp Site


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Sequence Requirements of the Listeria Innocua Prophage Attp Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:42.5
occ:1.00
CB A:CYS277 2.0 60.4 1.0
SG A:CYS302 2.3 43.6 1.0
SG A:CYS314 2.3 53.1 1.0
SG A:CYS274 2.3 38.6 1.0
SG A:CYS277 2.3 60.5 1.0
CB A:CYS274 3.3 36.7 1.0
CB A:CYS302 3.4 41.3 1.0
CA A:CYS277 3.5 63.0 1.0
CB A:CYS314 3.6 56.1 1.0
OG1 A:THR304 3.8 51.1 1.0
CG2 A:THR304 3.9 50.5 1.0
N A:CYS277 4.0 63.0 1.0
C A:CYS277 4.4 65.0 1.0
CB A:THR304 4.5 50.2 1.0
CB A:ASN316 4.7 48.7 1.0
CA A:CYS274 4.7 37.5 1.0
CA A:CYS302 4.8 38.0 1.0
CB A:LEU279 4.8 45.4 1.0
CA A:CYS314 4.9 57.0 1.0
O A:CYS277 4.9 67.9 1.0
C A:LYS276 4.9 95.3 1.0
N A:LEU279 5.0 45.1 1.0
ND2 A:ASN316 5.0 49.4 1.0
N A:GLY278 5.0 58.9 1.0

Reference:

H.Li, R.Sharp, K.Rutherford, K.Gupta, G.D.Van Duyne. Serine Integrase Attp Binding and Specificity. J. Mol. Biol. V. 430 4401 2018.
ISSN: ESSN 1089-8638
PubMed: 30227134
DOI: 10.1016/J.JMB.2018.09.007
Page generated: Wed Dec 16 11:40:43 2020

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