Zinc in PDB 6dk4: Crystal Structure of Campylobacter Jejuni Peroxide Stress Regulator

The structure of Crystal Structure of Campylobacter Jejuni Peroxide Stress Regulator, PDB code: 6dk4 was solved by S.Sarvan, J.S.Brunzelle, J.F.Couture, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	54.00 / 2.71
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	48.110, 70.186, 85.158, 90.00, 90.00, 90.00
R / Rfree (%)	21.5 / 27

The structure of Crystal Structure of Campylobacter Jejuni Peroxide Stress Regulator also contains other interesting chemical elements:

Manganese

(Mn)

2 atoms

The binding sites of Zinc atom in the Crystal Structure of Campylobacter Jejuni Peroxide Stress Regulator (pdb code 6dk4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Campylobacter Jejuni Peroxide Stress Regulator, PDB code: 6dk4:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Campylobacter Jejuni Peroxide Stress Regulator


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Campylobacter Jejuni Peroxide Stress Regulator within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:0.1 occ:1.00 SG A:CYS92 2.2 81.0 1.0 SG A:CYS89 2.7 74.3 1.0 SG A:CYS132 2.8 77.2 1.0 SG A:CYS135 3.1 0.4 0.5 CB A:CYS92 3.4 77.3 1.0 N A:CYS92 3.4 78.2 1.0 CB A:CYS89 3.5 68.8 1.0 CA A:CYS135 3.6 0.5 0.5 O A:LYS134 3.6 96.7 1.0 CB A:CYS135 3.9 0.7 0.5 CB A:LYS91 3.9 79.4 1.0 C A:LYS134 4.0 96.1 1.0 N A:CYS135 4.0 91.3 0.5 CA A:CYS92 4.0 77.5 1.0 CB A:CYS132 4.1 74.5 1.0 N A:CYS132 4.3 77.0 1.0 C A:LYS91 4.4 82.4 1.0 CA A:LYS91 4.5 76.1 1.0 CA A:CYS132 4.6 76.1 1.0 O A:CYS132 4.6 82.3 1.0 N A:GLY93 4.6 76.5 1.0 N A:LYS91 4.6 74.7 1.0 C A:CYS135 4.8 0.9 0.5 CA A:CYS89 4.8 66.0 1.0 C A:CYS132 4.8 83.3 1.0 C A:CYS92 4.9 81.6 1.0 CG A:LYS91 4.9 99.4 1.0 C A:CYS89 5.0 68.6 1.0 C A:ASN131 5.0 80.9 1.0 N A:LYS134 5.0 89.9 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Campylobacter Jejuni Peroxide Stress Regulator


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Campylobacter Jejuni Peroxide Stress Regulator within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn202 b:60.8 occ:1.00 SG B:CYS92 2.2 48.1 1.0 SG B:CYS135 2.4 74.7 1.0 SG B:CYS89 2.4 55.4 1.0 SG B:CYS132 2.4 56.4 1.0 CB B:CYS89 3.2 50.4 1.0 CB B:CYS132 3.4 52.1 1.0 CB B:CYS92 3.4 44.0 1.0 N B:CYS132 3.5 51.4 1.0 CB B:CYS135 3.5 71.6 1.0 N B:CYS92 3.9 45.9 1.0 CA B:CYS132 3.9 51.5 1.0 C B:ASN131 4.2 53.9 1.0 CA B:CYS92 4.2 44.4 1.0 C B:LYS134 4.4 54.8 1.0 O B:LYS134 4.4 55.3 1.0 C B:CYS132 4.4 58.5 1.0 N B:CYS135 4.5 51.2 1.0 CA B:CYS135 4.5 71.8 1.0 O B:CYS132 4.6 58.3 1.0 CA B:ASN131 4.6 47.3 1.0 CB B:LYS91 4.6 41.9 1.0 CA B:CYS89 4.7 49.0 1.0 CB B:LYS134 4.7 49.8 1.0 C B:LYS91 4.7 48.1 1.0 C B:CYS92 4.9 49.4 1.0 N B:GLY94 5.0 42.8 1.0

S.Sarvan, F.Charih, J.Butcher, J.S.Brunzelle, A.Stintzi, J.F.Couture. Crystal Structure of Campylobacter Jejuni Peroxide Regulator. Febs Lett. V. 592 2351 2018.
ISSN: ISSN 1873-3468
PubMed: 29856899
DOI: 10.1002/1873-3468.13120