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Zinc in PDB 6csl: Pneumococcal Phtd Protein 269-339 Fragment with Bound Zn(II)

Protein crystallography data

The structure of Pneumococcal Phtd Protein 269-339 Fragment with Bound Zn(II), PDB code: 6csl was solved by Z.Luo, V.G.Pederick, J.C.Paton, C.A.Mcdevitt, B.Kobe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.27 / 1.92
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 59.034, 47.978, 23.595, 90.00, 107.13, 90.00
R / Rfree (%) 14.8 / 19.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Pneumococcal Phtd Protein 269-339 Fragment with Bound Zn(II) (pdb code 6csl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Pneumococcal Phtd Protein 269-339 Fragment with Bound Zn(II), PDB code: 6csl:

Zinc binding site 1 out of 1 in 6csl

Go back to Zinc Binding Sites List in 6csl
Zinc binding site 1 out of 1 in the Pneumococcal Phtd Protein 269-339 Fragment with Bound Zn(II)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Pneumococcal Phtd Protein 269-339 Fragment with Bound Zn(II) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:14.3
occ:1.00
OD2 A:ASP293 2.0 10.4 1.0
ND1 A:HIS314 2.0 11.5 1.0
NE2 A:HIS319 2.0 9.8 1.0
NE2 A:HIS317 2.0 11.7 1.0
HB3 A:HIS314 2.9 17.9 1.0
CG A:ASP293 2.9 11.3 1.0
CE1 A:HIS314 2.9 14.9 1.0
CE1 A:HIS319 2.9 8.9 1.0
CE1 A:HIS317 3.0 13.0 1.0
CG A:HIS314 3.0 14.0 1.0
CD2 A:HIS317 3.1 11.9 1.0
CD2 A:HIS319 3.1 11.2 1.0
HE1 A:HIS319 3.1 10.7 1.0
HE1 A:HIS314 3.1 17.8 1.0
HE1 A:HIS317 3.1 15.6 1.0
OD1 A:ASP293 3.2 10.3 1.0
HD2 A:HIS317 3.3 14.3 1.0
HD2 A:HIS319 3.3 13.5 1.0
CB A:HIS314 3.3 14.9 1.0
HB2 A:HIS314 3.6 17.9 1.0
HB2 A:LEU295 3.8 16.0 1.0
NE2 A:HIS314 4.1 17.0 1.0
HD22 A:LEU295 4.1 16.5 1.0
ND1 A:HIS319 4.1 8.2 1.0
CD2 A:HIS314 4.1 17.6 1.0
ND1 A:HIS317 4.1 10.9 1.0
CG A:HIS317 4.2 12.6 1.0
CG A:HIS319 4.2 8.4 1.0
CB A:ASP293 4.3 15.0 1.0
O A:HIS314 4.5 16.4 1.0
HB2 A:ASP293 4.5 17.9 1.0
HB3 A:LEU295 4.5 16.0 1.0
HB3 A:ASP293 4.5 17.9 1.0
CB A:LEU295 4.6 13.3 1.0
CA A:HIS314 4.7 14.2 1.0
O A:HOH535 4.8 26.8 1.0
HE2 A:HIS314 4.8 20.4 1.0
HD1 A:HIS319 4.8 9.9 1.0
HD1 A:HIS317 4.9 13.1 1.0
H A:LEU295 4.9 12.6 1.0
CD2 A:LEU295 4.9 13.8 1.0
O A:HOH520 4.9 13.1 1.0
HD2 A:HIS314 5.0 21.1 1.0

Reference:

Z.Luo, V.G.Pederick, J.C.Paton, C.A.Mcdevitt, B.Kobe. Structural Characterisation of the HT3 Motif of the Polyhistidine Triad Protein D From Streptococcus Pneumoniae. Febs Lett. V. 592 2341 2018.
ISSN: ISSN 1873-3468
PubMed: 29856892
DOI: 10.1002/1873-3468.13122
Page generated: Wed Dec 16 11:37:48 2020

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