Zinc in PDB 6cg0: Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A)

Enzymatic activity of Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A)

All present enzymatic activity of Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A):
2.3.2.27;

Other elements in 6cg0:

The structure of Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A) also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A) (pdb code 6cg0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A), PDB code: 6cg0:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6cg0

Go back to Zinc Binding Sites List in 6cg0
Zinc binding site 1 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1101

b:88.1
occ:1.00
NE2 A:HIS942 2.2 70.3 1.0
SG A:CYS727 2.2 75.7 1.0
SG A:CYS730 2.2 74.5 1.0
NE2 A:HIS937 2.5 71.0 1.0
CB A:CYS727 2.5 75.7 1.0
CD2 A:HIS937 2.7 71.0 1.0
CD2 A:HIS942 3.0 70.3 1.0
CE1 A:HIS942 3.2 70.3 1.0
CB A:CYS730 3.6 74.5 1.0
CE1 A:HIS937 3.8 71.0 1.0
N A:CYS730 3.9 74.5 1.0
CA A:CYS727 4.0 75.7 1.0
CG A:HIS937 4.1 71.0 1.0
CG A:HIS942 4.1 70.3 1.0
ND1 A:HIS942 4.2 70.3 1.0
CA A:CYS730 4.3 74.5 1.0
CG2 A:THR732 4.4 73.5 1.0
ND1 A:HIS937 4.5 71.0 1.0
O A:CYS730 4.7 74.5 1.0
CB A:HIS744 4.7 75.8 1.0
C A:CYS730 4.7 74.5 1.0
N A:CYS727 4.8 75.7 1.0
C A:CYS727 4.8 75.7 1.0
C A:LEU729 4.9 72.4 1.0
CB A:LEU729 4.9 72.4 1.0

Zinc binding site 2 out of 2 in 6cg0

Go back to Zinc Binding Sites List in 6cg0
Zinc binding site 2 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Mouse RAG1/2 Hfc Complex (3.17 A) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1101

b:86.0
occ:1.00
NE2 C:HIS937 2.1 71.6 1.0
NE2 C:HIS942 2.1 71.5 1.0
CD2 C:HIS937 2.3 71.6 1.0
SG C:CYS727 2.4 71.6 1.0
SG C:CYS730 2.5 74.4 1.0
CD2 C:HIS942 2.8 71.5 1.0
CB C:CYS727 2.9 71.6 1.0
CE1 C:HIS942 3.3 71.5 1.0
CE1 C:HIS937 3.4 71.6 1.0
CG C:HIS937 3.6 71.6 1.0
CB C:CYS730 3.9 74.4 1.0
CG C:HIS942 4.1 71.5 1.0
ND1 C:HIS937 4.1 71.6 1.0
N C:CYS730 4.2 74.4 1.0
ND1 C:HIS942 4.2 71.5 1.0
CA C:CYS727 4.3 71.6 1.0
CG2 C:THR732 4.4 75.3 1.0
CA C:CYS730 4.6 74.4 1.0
CB C:ALA941 4.6 72.7 1.0
O C:HIS937 4.8 71.6 1.0
CB C:HIS937 4.8 71.6 1.0
CB C:HIS744 4.9 79.0 1.0
CB C:LEU729 4.9 72.5 1.0
C C:HIS937 5.0 71.6 1.0
CG C:HIS744 5.0 79.0 1.0

Reference:

M.S.Kim, W.Chuenchor, X.Chen, Y.Cui, X.Zhang, Z.H.Zhou, M.Gellert, W.Yang. Cracking the Dna Code For V(D)J Recombination. Mol. Cell V. 70 358 2018.
ISSN: ISSN 1097-4164
PubMed: 29628308
DOI: 10.1016/J.MOLCEL.2018.03.008
Page generated: Wed Dec 16 11:36:06 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy