Zinc in PDB 6c05: Mycobacterium Tuberculosis Rnap Holo/Rbpa in Relaxed State

All present enzymatic activity of Mycobacterium Tuberculosis Rnap Holo/Rbpa in Relaxed State:
2.7.7.6;

The structure of Mycobacterium Tuberculosis Rnap Holo/Rbpa in Relaxed State also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the Mycobacterium Tuberculosis Rnap Holo/Rbpa in Relaxed State (pdb code 6c05). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Mycobacterium Tuberculosis Rnap Holo/Rbpa in Relaxed State, PDB code: 6c05:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Mycobacterium Tuberculosis Rnap Holo/Rbpa in Relaxed State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Mycobacterium Tuberculosis Rnap Holo/Rbpa in Relaxed State within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn2000 b:0.9 occ:1.00 CB D:CYS891 1.9 0.4 1.0 SG D:CYS891 2.2 0.4 1.0 SG D:CYS968 2.3 0.9 1.0 SG D:CYS975 2.3 0.7 1.0 SG D:CYS978 2.3 0.0 1.0 CB D:CYS975 3.0 0.7 1.0 CA D:CYS891 3.2 0.4 1.0 CG2 D:THR970 3.5 0.1 1.0 N D:CYS975 3.5 0.7 1.0 CB D:CYS968 3.6 0.9 1.0 N D:CYS891 3.6 0.4 1.0 CB D:CYS978 3.6 0.0 1.0 CA D:CYS975 3.9 0.7 1.0 CA D:CYS968 4.0 0.9 1.0 N D:ALA969 4.3 0.2 1.0 C D:CYS891 4.3 0.4 1.0 OG1 D:THR970 4.5 0.1 1.0 C D:VAL974 4.5 0.5 1.0 C D:CYS968 4.6 0.9 1.0 N D:THR970 4.6 0.1 1.0 CB D:THR970 4.6 0.1 1.0 C D:ASP890 4.7 0.4 1.0 CA D:VAL974 4.8 0.5 1.0 C D:CYS975 4.8 0.7 1.0 N D:GLN892 4.8 0.8 1.0 O D:CYS975 4.9 0.7 1.0 CA D:CYS978 4.9 0.0 1.0 OE2 D:GLU888 5.0 0.3 1.0 N D:CYS978 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Mycobacterium Tuberculosis Rnap Holo/Rbpa in Relaxed State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Mycobacterium Tuberculosis Rnap Holo/Rbpa in Relaxed State within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn2001 b:0.9 occ:1.00 CB D:CYS78 1.9 0.3 1.0 SG D:CYS62 2.1 0.2 1.0 SG D:CYS78 2.2 0.3 1.0 SG D:CYS60 2.4 0.5 1.0 SG D:CYS75 2.4 0.1 1.0 CB D:CYS60 2.6 0.5 1.0 N D:CYS62 2.6 0.2 1.0 CB D:CYS62 2.7 0.2 1.0 CA D:CYS78 3.1 0.3 1.0 CA D:CYS62 3.2 0.2 1.0 N D:CYS78 3.2 0.3 1.0 CB D:CYS75 3.2 0.1 1.0 N D:TYR61 3.3 0.5 1.0 C D:CYS60 3.5 0.5 1.0 CA D:CYS60 3.6 0.5 1.0 C D:TYR61 3.7 0.5 1.0 N D:GLY63 4.0 0.1 1.0 CA D:TYR61 4.0 0.5 1.0 C D:CYS62 4.1 0.2 1.0 C D:CYS78 4.2 0.3 1.0 O D:CYS60 4.3 0.5 1.0 C D:ARG77 4.4 0.1 1.0 O D:CYS75 4.4 0.1 1.0 CA D:CYS75 4.6 0.1 1.0 CB D:TYR61 4.6 0.5 1.0 N D:GLY79 4.7 0.4 1.0 N D:CYS60 4.8 0.5 1.0 C D:CYS75 4.8 0.1 1.0 O D:TYR61 4.8 0.5 1.0 CB D:ARG77 5.0 0.1 1.0

H.Boyaci, J.Chen, M.Lilic, M.Palka, R.A.Mooney, R.Landick, S.A.Darst, E.A.Campbell. Fidaxomicin Jamsmycobacterium Tuberculosisrna Polymerase Motions Needed For Initiation Via Rbpa Contacts. Elife V. 7 2018.
ISSN: ESSN 2050-084X
PubMed: 29480804
DOI: 10.7554/ELIFE.34823