Atomistry » Zinc » PDB 6b2f-6bm9 » 6bd4
Atomistry »
  Zinc »
    PDB 6b2f-6bm9 »
      6bd4 »

Zinc in PDB 6bd4: Crystal Structure of Human Apo-FRIZZLED4 Receptor

Protein crystallography data

The structure of Crystal Structure of Human Apo-FRIZZLED4 Receptor, PDB code: 6bd4 was solved by S.Yang, Y.Wu, M.Pu, Y.Chen, S.Dong, Y.Guo, G.Y.Han, R.C.Stevens, S.Zhao, F.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.40
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 61.670, 154.690, 114.400, 90.00, 90.00, 90.00
R / Rfree (%) 21 / 23.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human Apo-FRIZZLED4 Receptor (pdb code 6bd4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Human Apo-FRIZZLED4 Receptor, PDB code: 6bd4:

Zinc binding site 1 out of 1 in 6bd4

Go back to Zinc Binding Sites List in 6bd4
Zinc binding site 1 out of 1 in the Crystal Structure of Human Apo-FRIZZLED4 Receptor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Apo-FRIZZLED4 Receptor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1101

b:81.7
occ:1.00
SG A:CYS1009 2.3 89.6 1.0
SG A:CYS1042 2.4 99.4 1.0
SG A:CYS1039 2.5 93.0 1.0
SG A:CYS1006 2.6 90.3 1.0
CB A:CYS1006 3.2 86.2 1.0
CB A:CYS1039 3.3 88.0 1.0
CB A:CYS1009 3.4 87.9 1.0
CB A:CYS1042 3.6 97.5 1.0
N A:CYS1009 3.8 87.3 1.0
N A:CYS1042 4.0 95.5 1.0
CA A:CYS1009 4.1 88.7 1.0
CG2 A:VAL1044 4.3 91.5 1.0
CA A:CYS1042 4.4 97.5 1.0
CB A:TYR1011 4.4 89.2 1.0
N A:GLY1010 4.6 88.4 1.0
CB A:VAL1008 4.7 85.8 1.0
N A:TYR1011 4.7 88.3 1.0
CA A:CYS1006 4.7 86.6 1.0
C A:CYS1009 4.7 94.7 1.0
CB A:LEU1041 4.8 95.9 1.0
N A:GLY1043 4.8 96.6 1.0
CA A:CYS1039 4.8 88.4 1.0
C A:VAL1008 4.9 90.7 1.0

Reference:

S.Yang, Y.Wu, T.H.Xu, P.W.De Waal, Y.He, M.Pu, Y.Chen, Z.J.Debruine, B.Zhang, S.A.Zaidi, P.Popov, Y.Guo, G.W.Han, Y.Lu, K.Suino-Powell, S.Dong, K.G.Harikumar, L.J.Miller, V.Katritch, H.E.Xu, W.Shui, R.C.Stevens, K.Melcher, S.Zhao, F.Xu. Crystal Structure of the Frizzled 4 Receptor in A Ligand-Free State. Nature V. 560 666 2018.
ISSN: ESSN 1476-4687
PubMed: 30135577
DOI: 10.1038/S41586-018-0447-X
Page generated: Wed Dec 16 11:31:49 2020

Last articles

Zn in 7M6U
Zn in 7NNG
Zn in 7NEE
Zn in 7NEU
Zn in 7M3K
Zn in 7KWD
Zn in 7KYH
Zn in 7KNG
Zn in 7KY2
Zn in 7KYF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy