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Zinc in PDB 6ah3: Cryo-Em Structure of Yeast Ribonuclease P with Pre-Trna Substrate

Enzymatic activity of Cryo-Em Structure of Yeast Ribonuclease P with Pre-Trna Substrate

All present enzymatic activity of Cryo-Em Structure of Yeast Ribonuclease P with Pre-Trna Substrate:
3.1.26.5;

Other elements in 6ah3:

The structure of Cryo-Em Structure of Yeast Ribonuclease P with Pre-Trna Substrate also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Yeast Ribonuclease P with Pre-Trna Substrate (pdb code 6ah3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Yeast Ribonuclease P with Pre-Trna Substrate, PDB code: 6ah3:

Zinc binding site 1 out of 1 in 6ah3

Go back to Zinc Binding Sites List in 6ah3
Zinc binding site 1 out of 1 in the Cryo-Em Structure of Yeast Ribonuclease P with Pre-Trna Substrate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Yeast Ribonuclease P with Pre-Trna Substrate within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn201

b:0.8
occ:1.00
SG K:CYS115 2.8 73.6 1.0
SG K:CYS90 2.9 53.5 1.0
SG K:CYS117 3.0 72.1 1.0
CB K:CYS115 3.4 73.6 1.0
CB K:CYS90 3.5 53.5 1.0
SG K:CYS93 3.5 48.9 1.0
CG K:ARG95 3.8 54.2 1.0
CD K:ARG95 3.8 54.2 1.0
NE K:ARG95 3.9 54.2 1.0
O K:THR119 4.1 71.6 1.0
CD2 K:LEU97 4.2 54.3 1.0
CB K:THR119 4.3 71.6 1.0
CB K:CYS117 4.5 72.1 1.0
CZ K:ARG95 4.7 54.2 1.0
CA K:CYS90 4.8 53.5 1.0
C K:THR119 4.9 71.6 1.0
N K:THR119 4.9 71.6 1.0
CA K:CYS115 4.9 73.6 1.0
N K:CYS117 5.0 72.1 1.0
CA K:THR119 5.0 71.6 1.0

Reference:

P.Lan, M.Tan, Y.Zhang, S.Niu, J.Chen, S.Shi, S.Qiu, X.Wang, X.Peng, G.Cai, H.Cheng, J.Wu, G.Li, M.Lei. Structural Insight Into Precursor Trna Processing By Yeast Ribonuclease P. Science V. 362 2018.
ISSN: ESSN 1095-9203
PubMed: 30262633
DOI: 10.1126/SCIENCE.AAT6678
Page generated: Mon Oct 28 17:31:39 2024

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