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Zinc in PDB 6aco: Histone Lysine Desuccinylase SIRT5 in Complex with Succinyl Peptide H2BK120

Protein crystallography data

The structure of Histone Lysine Desuccinylase SIRT5 in Complex with Succinyl Peptide H2BK120, PDB code: 6aco was solved by T.R.Hang, W.B.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.27 / 1.71
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 33.885, 64.877, 55.564, 90.00, 95.92, 90.00
R / Rfree (%) 16.1 / 21.7

Other elements in 6aco:

The structure of Histone Lysine Desuccinylase SIRT5 in Complex with Succinyl Peptide H2BK120 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Histone Lysine Desuccinylase SIRT5 in Complex with Succinyl Peptide H2BK120 (pdb code 6aco). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Histone Lysine Desuccinylase SIRT5 in Complex with Succinyl Peptide H2BK120, PDB code: 6aco:

Zinc binding site 1 out of 1 in 6aco

Go back to Zinc Binding Sites List in 6aco
Zinc binding site 1 out of 1 in the Histone Lysine Desuccinylase SIRT5 in Complex with Succinyl Peptide H2BK120


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Histone Lysine Desuccinylase SIRT5 in Complex with Succinyl Peptide H2BK120 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:44.0
occ:1.00
SG A:CYS169 2.2 36.0 0.5
CB A:CYS169 2.3 35.6 0.5
SG A:CYS212 2.3 32.5 0.5
SG A:CYS166 2.4 44.9 1.0
SG A:CYS212 2.4 33.3 0.5
SG A:CYS207 2.5 38.5 1.0
CB A:CYS207 2.8 29.4 1.0
CB A:CYS166 3.1 41.3 1.0
CB A:CYS212 3.1 38.8 0.5
CB A:CYS169 3.2 39.5 0.5
CB A:CYS212 3.2 40.0 0.5
SG A:CYS169 3.3 38.9 0.5
CA A:CYS169 3.6 37.8 0.5
N A:CYS169 3.7 39.7 1.0
CA A:CYS169 3.9 37.5 0.5
N A:GLY214 4.2 47.9 1.0
CA A:CYS207 4.3 31.8 1.0
CA A:GLY214 4.5 42.1 1.0
CA A:CYS166 4.5 32.5 1.0
CA A:CYS212 4.5 38.3 0.5
CA A:CYS212 4.6 38.0 0.5
CG1 A:VAL171 4.7 46.1 1.0
C A:CYS169 4.7 38.6 1.0
C A:SER168 4.8 38.4 1.0
CB A:SER168 4.8 44.4 1.0
C A:CYS212 4.9 40.1 1.0
N A:GLY213 4.9 42.7 1.0
N A:GLY170 4.9 41.0 1.0
O A:HOH687 4.9 44.5 1.0

Reference:

T.R.Hang, W.B.Chen. Complex Structure of Histone Lysine Desuccinylase SIRT5 with Succinyl Peptide H2BK120 To Be Published.
Page generated: Wed Dec 16 11:29:26 2020

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