Zinc in PDB 6ace: Histone Lysine Desuccinylase SIRT5 in Complex with Succinyl Peptide H3K122

The structure of Histone Lysine Desuccinylase SIRT5 in Complex with Succinyl Peptide H3K122, PDB code: 6ace was solved by T.R.Hang, W.B.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	61.41 / 1.98
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	123.227, 41.169, 55.854, 90.00, 94.69, 90.00
R / Rfree (%)	20.3 / 26.6

The binding sites of Zinc atom in the Histone Lysine Desuccinylase SIRT5 in Complex with Succinyl Peptide H3K122 (pdb code 6ace). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Histone Lysine Desuccinylase SIRT5 in Complex with Succinyl Peptide H3K122, PDB code: 6ace:

Zinc binding site 1 out of 1 in the Histone Lysine Desuccinylase SIRT5 in Complex with Succinyl Peptide H3K122


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Histone Lysine Desuccinylase SIRT5 in Complex with Succinyl Peptide H3K122 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:23.9 occ:1.00 SG A:CYS207 2.3 19.8 1.0 SG A:CYS166 2.3 19.6 1.0 SG A:CYS212 2.3 23.7 1.0 SG A:CYS169 2.4 27.2 1.0 CB A:CYS207 3.0 19.8 1.0 CB A:CYS166 3.1 17.8 1.0 CB A:CYS212 3.1 23.8 1.0 CB A:CYS169 3.4 25.7 1.0 N A:CYS169 3.8 23.1 1.0 CA A:CYS169 4.2 26.1 1.0 CG1 A:VAL171 4.4 28.4 1.0 CG A:GLU209 4.4 39.4 1.0 CA A:CYS207 4.4 19.3 1.0 N A:GLY214 4.5 24.2 1.0 CA A:CYS166 4.5 15.6 1.0 CA A:CYS212 4.6 24.3 1.0 CB A:GLU209 4.6 36.2 1.0 CB A:SER168 4.6 26.6 1.0 CA A:GLY214 4.8 20.9 1.0 O A:HOH604 4.8 25.5 1.0 C A:SER168 4.9 24.4 1.0 C A:CYS169 4.9 25.5 1.0 C A:CYS212 5.0 26.0 1.0

T.R.Hang, W.B.Chen, J.Y.Zang, X.Zhang. Complex Structure of Histone Lysine Desuccinylase SIRT5 with Succinyl Peptide H3K122 To Be Published.