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Zinc in PDB 6a93: Crystal Structure of 5-HT2AR in Complex with Risperidone

Protein crystallography data

The structure of Crystal Structure of 5-HT2AR in Complex with Risperidone, PDB code: 6a93 was solved by T.K.Kimura, H.Asada, A.Inoue, F.M.N.Kadji, D.Im, C.Mori, T.Arakawa, K.Hirata, Y.Nomura, N.Nomura, J.Aoki, S.Iwata, T.Shimamura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.24 / 3.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 277.720, 42.150, 91.940, 90.00, 92.55, 90.00
R / Rfree (%) 24.4 / 27.5

Other elements in 6a93:

The structure of Crystal Structure of 5-HT2AR in Complex with Risperidone also contains other interesting chemical elements:

Fluorine (F) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of 5-HT2AR in Complex with Risperidone (pdb code 6a93). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of 5-HT2AR in Complex with Risperidone, PDB code: 6a93:

Zinc binding site 1 out of 1 in 6a93

Go back to Zinc Binding Sites List in 6a93
Zinc binding site 1 out of 1 in the Crystal Structure of 5-HT2AR in Complex with Risperidone


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of 5-HT2AR in Complex with Risperidone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn3003

b:13.1
occ:1.00
OE2 A:GLU264 2.0 12.5 1.0
OE1 A:GLU318 2.0 24.1 1.0
NE2 A:HIS182 2.1 21.6 1.0
NE2 A:HIS183 2.2 22.8 1.0
OE2 A:GLU318 2.5 22.3 1.0
CD A:GLU318 2.5 22.9 1.0
CD2 A:HIS183 2.9 28.8 1.0
CD A:GLU264 2.9 14.3 1.0
CD2 A:HIS182 3.0 26.2 1.0
CE1 A:HIS182 3.2 12.5 1.0
CE1 A:HIS183 3.2 25.3 1.0
OE1 A:GLU264 3.3 12.6 1.0
CG A:GLU318 4.0 21.4 1.0
CG A:HIS183 4.0 30.9 1.0
ND1 A:HIS183 4.1 29.0 1.0
CG A:HIS182 4.1 26.0 1.0
ND1 A:HIS182 4.2 29.1 1.0
CG A:GLU264 4.3 19.6 1.0
CD2 A:LEU261 4.8 14.2 1.0
CB A:GLU318 4.9 15.1 1.0
CG2 A:ILE177 4.9 14.5 1.0
CB A:ILE177 4.9 14.0 1.0

Reference:

K.T.Kimura, H.Asada, A.Inoue, F.M.N.Kadji, D.Im, C.Mori, T.Arakawa, K.Hirata, Y.Nomura, N.Nomura, J.Aoki, S.Iwata, T.Shimamura. Structures of the 5-HT2ARECEPTOR in Complex with the Antipsychotics Risperidone and Zotepine. Nat.Struct.Mol.Biol. V. 26 121 2019.
ISSN: ESSN 1545-9985
PubMed: 30723326
DOI: 10.1038/S41594-018-0180-Z
Page generated: Wed Dec 16 11:29:16 2020

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