Zinc in PDB 5x42: Structure of Dotl(590-659)-Dotn Derived From Legionella Pneumophila

The structure of Structure of Dotl(590-659)-Dotn Derived From Legionella Pneumophila, PDB code: 5x42 was solved by M.J.Kwak, J.D.Kim, B.H.Oh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.58 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.683, 72.220, 170.435, 90.00, 90.00, 90.00
R / Rfree (%)	21.1 / 26

The binding sites of Zinc atom in the Structure of Dotl(590-659)-Dotn Derived From Legionella Pneumophila (pdb code 5x42). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Dotl(590-659)-Dotn Derived From Legionella Pneumophila, PDB code: 5x42:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of Dotl(590-659)-Dotn Derived From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Dotl(590-659)-Dotn Derived From Legionella Pneumophila within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:34.2 occ:1.00 SG A:CYS84 2.2 23.1 1.0 SG A:CYS52 2.4 22.0 1.0 SG A:CYS55 2.4 21.7 1.0 SG A:CYS87 2.4 21.4 1.0 CB A:CYS52 3.3 24.6 1.0 CB A:CYS87 3.3 23.5 1.0 CB A:CYS84 3.4 25.2 1.0 CB A:CYS55 3.4 17.3 1.0 N A:CYS55 3.8 22.4 1.0 N A:CYS84 3.9 22.6 1.0 CA A:CYS55 4.1 23.6 1.0 CA A:CYS84 4.1 25.6 1.0 N A:CYS87 4.1 22.4 1.0 CA A:CYS87 4.4 22.3 1.0 NE2 A:HIS122 4.5 21.8 1.0 C A:CYS84 4.6 26.8 1.0 O A:CYS84 4.6 23.4 1.0 CB A:PHE57 4.7 25.3 1.0 CA A:CYS52 4.7 26.5 1.0 C A:CYS55 4.7 26.0 1.0 CB A:ASN118 4.8 18.9 1.0 CB A:PHE54 4.8 22.4 1.0 N A:GLY56 4.8 24.1 1.0 C A:PHE54 4.8 24.9 1.0 N A:PHE57 4.8 23.0 1.0 ND2 A:ASN118 4.9 16.9 1.0 CD2 A:HIS122 4.9 25.3 1.0

Zinc binding site 2 out of 2 in the Structure of Dotl(590-659)-Dotn Derived From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Dotl(590-659)-Dotn Derived From Legionella Pneumophila within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn301 b:37.2 occ:1.00 SG C:CYS52 2.3 28.8 1.0 SG C:CYS84 2.3 25.5 1.0 SG C:CYS55 2.4 24.4 1.0 SG C:CYS87 2.4 24.8 1.0 CB C:CYS55 3.2 23.7 1.0 CB C:CYS87 3.3 25.1 1.0 CB C:CYS52 3.3 29.5 1.0 CB C:CYS84 3.5 30.6 1.0 N C:CYS55 3.7 29.3 1.0 N C:CYS84 3.9 29.6 1.0 CA C:CYS55 4.0 31.8 1.0 N C:CYS87 4.1 23.1 1.0 CA C:CYS84 4.2 32.1 1.0 CA C:CYS87 4.3 21.1 1.0 NE2 C:HIS122 4.5 24.7 1.0 CB C:PHE57 4.6 30.6 1.0 C C:CYS55 4.6 31.3 1.0 CB C:ASN118 4.7 21.4 1.0 CA C:CYS52 4.7 31.0 1.0 N C:GLY56 4.7 33.1 1.0 O C:CYS84 4.7 26.8 1.0 C C:PHE54 4.8 32.4 1.0 C C:CYS84 4.8 26.9 1.0 CB C:PHE54 4.8 30.9 1.0 N C:PHE57 4.8 29.6 1.0 CD2 C:HIS122 4.9 26.1 1.0 ND2 C:ASN118 5.0 23.8 1.0

M.J.Kwak, J.D.Kim, H.Kim, C.Kim, J.W.Bowman, S.Kim, K.Joo, J.Lee, K.S.Jin, Y.G.Kim, N.K.Lee, J.U.Jung, B.H.Oh. Architecture of the Type IV Coupling Protein Complex of Legionella Pneumophila Nat Microbiol V. 2 17114 2017.
ISSN: ESSN 2058-5276
PubMed: 28714967
DOI: 10.1038/NMICROBIOL.2017.114