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Zinc in PDB 5wxg: Structure of Taf Phd Finger Domain Binds to H3(1-15)K4AC

Protein crystallography data

The structure of Structure of Taf Phd Finger Domain Binds to H3(1-15)K4AC, PDB code: 5wxg was solved by S.Zhao, H.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.34 / 1.70
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 50.840, 52.868, 54.122, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 19.5

Other elements in 5wxg:

The structure of Structure of Taf Phd Finger Domain Binds to H3(1-15)K4AC also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Taf Phd Finger Domain Binds to H3(1-15)K4AC (pdb code 5wxg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Taf Phd Finger Domain Binds to H3(1-15)K4AC, PDB code: 5wxg:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 5wxg

Go back to Zinc Binding Sites List in 5wxg
Zinc binding site 1 out of 2 in the Structure of Taf Phd Finger Domain Binds to H3(1-15)K4AC


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Taf Phd Finger Domain Binds to H3(1-15)K4AC within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:18.1
occ:1.00
SG A:CYS888 2.3 18.1 1.0
SG A:CYS911 2.3 16.3 1.0
SG A:CYS885 2.4 15.7 1.0
SG A:CYS914 2.4 20.2 1.0
CB A:CYS885 3.2 14.7 1.0
CB A:CYS914 3.2 19.4 1.0
CB A:CYS888 3.3 21.5 1.0
CB A:CYS911 3.4 13.5 1.0
N A:CYS888 3.6 21.5 1.0
N A:CYS911 4.0 15.5 1.0
CA A:CYS888 4.0 20.3 1.0
N A:CYS914 4.1 15.2 1.0
O A:HOH1152 4.2 35.1 1.0
CA A:CYS911 4.3 13.8 1.0
CA A:CYS914 4.3 15.6 1.0
O A:HOH1101 4.4 19.9 1.0
O A:HOH1150 4.4 33.1 1.0
CA A:CYS885 4.6 14.8 1.0
CB A:ASP887 4.6 19.7 1.0
C A:CYS888 4.7 23.4 1.0
N A:ASP889 4.7 20.4 1.0
C A:ASP887 4.8 24.5 1.0
C A:CYS911 4.8 13.8 1.0
O A:CYS911 4.8 14.5 1.0

Zinc binding site 2 out of 2 in 5wxg

Go back to Zinc Binding Sites List in 5wxg
Zinc binding site 2 out of 2 in the Structure of Taf Phd Finger Domain Binds to H3(1-15)K4AC


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Taf Phd Finger Domain Binds to H3(1-15)K4AC within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1002

b:17.7
occ:1.00
ND1 A:HIS893 2.2 18.5 1.0
SG A:CYS896 2.3 19.1 1.0
SG A:CYS873 2.3 16.3 1.0
SG A:CYS870 2.3 15.8 1.0
CB A:CYS870 3.0 13.9 1.0
CE1 A:HIS893 3.1 14.6 1.0
CG A:HIS893 3.2 16.0 1.0
CB A:CYS873 3.2 19.4 1.0
CB A:CYS896 3.3 17.9 1.0
CB A:HIS893 3.5 15.2 1.0
N A:CYS873 3.6 18.3 1.0
CA A:CYS873 4.0 16.7 1.0
N A:HIS893 4.1 14.3 1.0
NE2 A:HIS893 4.2 16.6 1.0
CD2 A:HIS893 4.3 17.4 1.0
O A:HOH1156 4.3 31.5 1.0
CA A:HIS893 4.4 14.1 1.0
CA A:CYS870 4.5 13.5 1.0
C A:GLY872 4.6 23.3 1.0
CA A:CYS896 4.7 17.6 1.0
O A:HOH1154 4.8 29.3 1.0
O A:CYS870 4.8 17.1 1.0
C A:CYS873 4.9 17.5 1.0
C A:CYS870 4.9 15.8 1.0
O A:HIS893 4.9 15.2 1.0
CA A:GLY872 4.9 20.5 1.0
N A:GLY872 4.9 17.1 1.0
O A:LYS875 5.0 16.3 1.0

Reference:

S.Zhao, M.Yang, W.Zhou, B.Zhang, Z.Cheng, J.Huang, M.Zhang, Z.Wang, R.Wang, Z.Chen, J.Zhu, H.Li. Kinetic and High-Throughput Profiling of Epigenetic Interactions By 3D-Carbene Chip-Based Surface Plasmon Resonance Imaging Technology Proc. Natl. Acad. Sci. V. 114 E7245 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28808021
DOI: 10.1073/PNAS.1704155114
Page generated: Wed Dec 16 11:18:38 2020

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